Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 4.7e-114 414.5 197 100.0
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 8.0e-114 413.7 197 99.0
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.4e-110 402.9 197 96.4
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 4.9e-103 377.9 195 88.7
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.4e-102 376.3 195 88.7
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.1e-102 375.2 195 87.7
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 7.8e-101 370.5 187 91.4
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 2.9e-87 325.5 187 78.1
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 4.6e-85 318.2 186 79.0
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 7.8e-85 317.4 191 74.9
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 1.0e-84 317.0 191 73.3
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 1.5e-83 313.2 187 75.9
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 2.5e-83 312.4 183 79.2
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 9.5e-83 310.5 186 78.0
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 4.7e-82 308.1 187 74.3
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.7e-82 308.1 187 75.4
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 6.2e-82 307.8 187 74.9
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 8.1e-82 307.4 186 74.2
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.1e-81 307.0 187 77.0
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.4e-81 306.6 195 73.3
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 3.1e-81 305.4 187 75.4
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.0e-81 305.1 187 74.9
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 4.0e-81 305.1 187 74.9
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 8.9e-81 303.9 187 73.3
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 8.9e-81 303.9 187 73.3
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 8.9e-81 303.9 189 75.1
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 1.2e-80 303.5 185 76.8
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 2.0e-80 302.8 190 73.7
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 2.6e-80 302.4 188 73.4
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 2.6e-80 302.4 187 75.4
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 7.5e-80 300.8 187 73.8
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 9.9e-80 300.4 188 72.9
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.2e-79 299.3 187 73.8
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 2.9e-79 298.9 192 73.4
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 6.4e-79 297.7 187 73.3
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 8.3e-79 297.4 187 72.7
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 8.3e-79 297.4 189 70.9
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 8.3e-79 297.4 187 72.7
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 1.1e-78 297.0 187 72.2
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.4e-78 295.8 187 72.2
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 4.1e-78 295.0 187 72.7
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 5.4e-78 294.7 202 70.8
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 5.4e-78 294.7 183 71.6
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 9.2e-78 293.9 188 69.7
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 1.2e-77 293.5 187 73.8
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 2.7e-77 292.4 187 72.7
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.7e-76 289.7 188 69.7
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.7e-76 289.7 188 69.7
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 1.7e-76 289.7 187 72.2
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 3.9e-76 288.5 188 69.7
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 5.1e-76 288.1 186 71.5
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.5e-75 286.6 187 71.7
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 5.6e-75 284.6 187 70.1
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 7.3e-75 284.3 186 70.4
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 7.3e-75 284.3 186 70.4
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 7.3e-75 284.3 185 70.8
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 7.3e-75 284.3 186 69.9
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 9.6e-75 283.9 226 59.7
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 1.2e-74 283.5 184 70.1
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-74 283.5 184 70.1
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.6e-74 283.1 185 70.3
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 2.8e-74 282.3 186 69.9
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.7e-74 281.6 188 68.1
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 6.2e-74 281.2 187 69.0
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 6.2e-74 281.2 187 70.6
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 8.1e-74 280.8 187 70.1
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.1e-73 280.4 187 68.4
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 3.1e-73 278.9 186 68.8
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 4.0e-73 278.5 187 68.4
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 5.2e-73 278.1 187 71.1
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 5.2e-73 278.1 183 71.6
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.5e-72 276.6 187 69.0
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 2.0e-72 276.2 186 66.7
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.6e-72 275.8 186 66.7
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 3.4e-72 275.4 188 69.7
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 4.4e-72 275.0 186 66.7
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 9.9e-72 273.9 183 69.9
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 1.3e-71 273.5 186 66.1
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 1.3e-71 273.5 186 66.1
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 3.8e-71 271.9 187 66.3
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.9e-71 271.6 190 67.4
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 8.4e-71 270.8 217 62.7
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.1e-70 270.4 188 69.1
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.9e-70 269.6 186 67.7
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 3.2e-70 268.9 188 68.1
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.2e-69 266.9 189 66.1
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.2e-69 266.9 189 65.6
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.3e-68 263.5 186 66.1
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 5.1e-68 261.5 187 65.2
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 1.1e-67 260.4 188 64.4
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.9e-67 259.6 192 64.1
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 5.6e-67 258.1 192 64.1
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 9.6e-67 257.3 190 64.7
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.1e-66 256.1 182 67.0
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.4e-65 253.4 188 65.4
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.4e-65 252.7 185 63.8
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 5.3e-65 251.5 185 64.3
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.0e-64 249.6 194 61.3
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 9.9e-64 247.3 187 63.6
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.3e-63 246.9 186 64.0
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 4.9e-63 245.0 192 62.0
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.2e-62 241.9 148 73.6
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 9.3e-62 240.7 148 73.0
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 3.9e-60 235.3 187 62.6
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 1.9e-59 233.0 189 59.3
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.8e-58 228.4 189 59.8
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 6.2e-58 228.0 175 64.6
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.4e-57 226.9 189 60.3
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.8e-57 226.5 179 62.6
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 6.9e-57 224.6 187 59.4
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 7.6e-56 221.1 187 56.7
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 2.2e-55 219.5 190 56.3
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 7.1e-54 214.5 175 58.3
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 9.3e-54 214.2 198 56.6
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.9e-52 208.8 188 57.4
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 5.1e-52 208.4 173 60.1
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 7.4e-51 204.5 183 54.1
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.6e-50 203.4 135 67.4
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.5e-48 196.8 185 50.3
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 9.0e-41 171.0 110 68.2
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.5e-30 136.3 110 60.0
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.5e-30 136.3 85 70.6
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 2.7e-29 132.9 79 78.5
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.4e-25 120.6 98 61.2
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 7.4e-19 98.2 120 47.5
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 6.3e-18 95.1 95 51.6
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.8e-09 67.0 76 44.7


User provided reference genes

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