Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072765.1 Solanum lycopersicum HOM05D008034 ORTHO05D010051 4.8e-111 404.4 197 100.0
CAN.G84.9 Capsicum annuum HOM05D008034 ORTHO05D010051 8.9e-89 330.5 186 84.9
Nitab4.5_0007786g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 2.5e-83 312.4 196 75.0
Nitab4.5_0002380g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 2.3e-81 305.8 188 77.7
QL01p035245 Quercus lobata HOM05D008034 ORTHO05D010051 1.9e-70 269.6 156 75.6
Actinidia37272 Actinidia chinensis HOM05D008034 ORTHO05D010051 2.7e-69 265.8 176 69.9
Manes.11G137800 Manihot esculenta HOM05D008034 ORTHO05D010051 7.8e-69 264.2 167 68.3
CSS0025126 Camellia sinensis var. sinensis HOM05D008034 ORTHO05D010051 1.5e-67 260.0 155 76.1
Hma1.2p1_0035F.1_g021690 Hydrangea macrophylla HOM05D008034 ORTHO05D010051 1.5e-67 260.0 153 73.2
Actinidia27676 Actinidia chinensis HOM05D008034 ORTHO05D010051 1.9e-67 259.6 176 69.3
ClCG02G020510 Citrullus lanatus HOM05D008034 ORTHO05D010051 3.6e-66 255.4 154 75.3
TAR623G1523 Trochodendron aralioides HOM05D008034 ORTHO05D010051 4.8e-66 255.0 183 63.9
Prupe.6G089000 Prunus persica HOM05D008034 ORTHO05D010051 6.2e-66 254.6 154 74.0
FvH4_3g34350 Fragaria vesca HOM05D008034 ORTHO05D010051 8.1e-66 254.2 156 73.1
Rhsim13G0089800 Rhododendron simsii HOM05D001089 ORTHO05D000920 8.1e-66 254.2 156 73.1
TWI75G0515 Tripterygium wilfordii HOM05D008034 ORTHO05D010051 8.1e-66 254.2 173 67.1
Atru.chr3.3772 Acer truncatum HOM05D008034 ORTHO05D010051 2.4e-65 252.7 155 72.9
Duzib170G0117 Durio zibethinus HOM05D008034 ORTHO05D010051 2.4e-65 252.7 175 65.7
Lsat_1_v5_gn_9_21900 Lactuca sativa HOM05D008034 ORTHO05D010051 3.1e-65 252.3 184 63.6
RhsimUnG0139800 Rhododendron simsii HOM05D001089 ORTHO05D000920 3.1e-65 252.3 156 72.4
Psat3g140960 Pisum sativum HOM05D008034 ORTHO05D010051 4.0e-65 251.9 150 74.0
Ciclev10029356m.g Citrus clementina HOM05D008034 ORTHO05D010051 6.9e-65 251.1 153 73.9
CsaV3_6G021950 Cucumis sativus L. HOM05D008034 ORTHO05D010051 6.9e-65 251.1 149 75.2
Glyma.18G177500 Glycine max HOM05D008034 ORTHO05D010051 6.9e-65 251.1 148 73.6
Gohir.A07G094200 Gossypium hirsutum HOM05D008034 ORTHO05D010051 6.9e-65 251.1 158 69.0
Medtr7g060450 Medicago truncatula HOM05D008034 ORTHO05D010051 1.5e-64 250.0 174 64.4
Thecc.09G333100 Theobroma cacao HOM05D008034 ORTHO05D010051 2.0e-64 249.6 155 71.0
Haze_23982 Corylus avellana HOM05D008034 ORTHO05D010051 2.6e-64 249.2 155 71.6
Lalb_Chr03g0042121 Lupinus albus HOM05D008034 ORTHO05D010051 3.4e-64 248.8 153 71.2
MELO3C025715.2 Cucumis melo HOM05D008034 ORTHO05D010051 4.4e-64 248.4 144 77.8
Gohir.D07G098700 Gossypium hirsutum HOM05D008034 ORTHO05D010051 4.4e-64 248.4 178 63.5
Gorai.001G106200 Gossypium raimondii HOM05D008034 ORTHO05D010051 4.4e-64 248.4 178 63.5
GSVIVG01025076001 Vitis vinifera HOM05D008034 ORTHO05D010051 9.9e-64 247.3 177 62.1
Lalb_Chr03g0035081 Lupinus albus HOM05D008034 ORTHO05D010051 1.7e-63 246.5 151 71.5
Phvul.008G100300 Phaseolus vulgaris HOM05D008034 ORTHO05D010051 1.7e-63 246.5 149 71.8
ECA247G3899 Erigeron canadensis HOM05D008034 ORTHO05D010051 2.2e-63 246.1 182 61.0
arahy.Tifrunner.gnm1.ann1.JRZ5DE Arachis hypogaea HOM05D008034 ORTHO05D010051 2.9e-63 245.7 151 71.5
arahy.Tifrunner.gnm1.ann1.YB7TH1 Arachis hypogaea HOM05D008034 ORTHO05D010051 2.9e-63 245.7 151 72.2
CiPaw.13G103300 Carya illinoinensis HOM05D008034 ORTHO05D010051 3.8e-63 245.4 149 73.2
Cfa011409 Carpinus fangiana HOM05D008034 ORTHO05D010051 6.4e-63 244.6 165 67.3
Cpa.g.sc139.12 Carica papaya HOM05D008034 ORTHO05D010051 8.4e-63 244.2 184 59.8
HanXRQChr08g0230621 Helianthus annuus HOM05D008034 ORTHO05D010051 1.2e-61 240.4 182 57.7
COL.COLO4_18407 Corchorus olitorius HOM05D008034 ORTHO05D010051 1.6e-61 240.0 181 60.2
Aqoxy4G03114 Aquilegia oxysepala HOM05D008034 ORTHO05D010051 1.7e-60 236.5 152 67.1
Sed0016706 Sechium edule HOM05D008034 ORTHO05D010051 3.0e-60 235.7 154 68.8
FAN11G2200 Fragaria x ananassa HOM05D008034 ORTHO05D010051 4.3e-59 231.9 143 74.1
Eucgr.B02437 Eucalyptus grandis HOM05D008034 ORTHO05D010051 1.6e-58 229.9 157 63.1
Glyma.08G359000 Glycine max HOM05D008034 ORTHO05D010051 2.1e-58 229.6 156 66.7
CANSAT54G0614 Cannabis sativa HOM05D008034 ORTHO05D010051 9.0e-57 224.2 190 55.8
Nn2g10576 Nelumbo nucifera HOM05D008034 ORTHO05D010051 4.5e-56 221.9 180 60.0
MBI14_g16339_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D010051 6.4e-55 218.0 169 56.8
PSO724G0148 Papaver somniferum HOM05D008034 ORTHO05D010051 1.4e-54 216.9 156 62.8
PSO729G0256 Papaver somniferum HOM05D008034 ORTHO05D010051 9.3e-54 214.2 156 62.8
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 1.6e-53 213.4 178 53.9
ATR0594G086 Amborella trichopoda HOM05D008034 ORTHO05D010051 4.6e-53 211.8 158 58.9
VMungo1383G3175 Vigna mungo HOM05D008034 ORTHO05D010051 6.7e-52 208.0 129 69.0
Ah.15g096410 Amaranthus hybridus HOM05D008034 ORTHO05D010051 1.9e-51 206.5 146 61.6
AUR62009660 Chenopodium quinoa HOM05D008034 ORTHO05D010051 5.6e-51 204.9 151 60.3
PGR102G1024 Punica granatum HOM05D008034 ORTHO05D010051 8.4e-47 191.0 179 49.7
Sopen11g030440 Solanum pennellii HOM05D008034 ORTHO05D010051 1.1e-46 190.7 88 97.7
PSO416G0003 Papaver somniferum HOM05D008034 ORTHO05D010051 1.1e-43 180.6 136 63.2
TPR.G23264 Trifolium pratense HOM05D008034 ORTHO05D010051 1.5e-43 180.3 132 61.4
Dinv06338 Davidia involucrata HOM05D008034 ORTHO05D010051 1.1e-41 174.1 109 65.1
Sc21g0005330 Simmondsia chinensis HOM05D008034 ORTHO05D010051 1.5e-40 170.2 113 62.8
AUR62001862 Chenopodium quinoa HOM05D008034 ORTHO05D010051 7.9e-37 157.9 153 49.0
SEGI_07630 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 1.3e-26 124.0 144 43.1
ATR0594G007 Amborella trichopoda HOM05D001120 ORTHO05D010051 1.2e-24 117.5 147 43.5
FAN01G1155 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.5e-24 117.1 171 39.2
FAN01G1685 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.5e-24 117.1 171 39.2
FAN06G3907 Fragaria x ananassa HOM05D001787 ORTHO05D007379 5.9e-24 115.2 171 38.6
RcHm_v2.0_Chr1g0364691 Rosa chinensis HOM05D008034 ORTHO05D010051 1.0e-23 114.4 171 38.6
FAN10G0756 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.7e-23 113.6 171 38.6
MD07G1183300 Malus domestica HOM05D008034 ORTHO05D010051 2.9e-23 112.8 142 42.3
FvH4_7g20661 Fragaria vesca HOM05D008034 ORTHO05D010051 1.4e-22 110.5 152 39.5
SEGI_39089 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 1.4e-22 110.5 173 37.0
FAN06G2736 Fragaria x ananassa HOM05D001787 ORTHO05D007379 5.5e-22 108.6 181 37.0
Prupe.2G222000 Prunus persica HOM05D001120 ORTHO05D010051 5.5e-22 108.6 171 37.4
SEGI_26238 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 7.2e-22 108.2 179 36.3
FAN03G1672 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.2e-21 107.5 181 37.0
Potri.010G214400 Populus trichocarpa HOM05D008034 ORTHO05D010051 1.2e-21 107.5 171 37.4
TAR369G0105 Trochodendron aralioides HOM05D008034 ORTHO05D010051 2.1e-21 106.7 183 37.2
Cpa.g.sc10.57 Carica papaya HOM05D001787 ORTHO05D007379 4.7e-21 105.5 172 38.4
Nn2g10579 Nelumbo nucifera HOM05D001120 ORTHO05D010051 5.1e-20 102.1 169 36.7
MBI14_g46136_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 6.3e-18 95.1 156 38.5
Manes.07G106000 Manihot esculenta HOM05D008034 ORTHO05D002447 5.3e-17 92.0 173 35.3
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 1.2e-16 90.9 190 30.0
Hma1.2p1_0018F.1_g012390 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 4.5e-16 89.0 176 31.8
Haze_16964 Corylus avellana HOM05D008034 ORTHO05D010051 7.7e-16 88.2 177 31.6
TPR.G26127 Trifolium pratense HOM05D001120 ORTHO05D002447 3.8e-15 85.9 155 29.0
Medtr1g102420 Medicago truncatula HOM05D001120 ORTHO05D002447 8.5e-15 84.7 155 28.4
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 1.9e-14 83.6 147 31.3
Lalb_Chr06g0160841 Lupinus albus HOM05D001120 ORTHO05D002447 3.2e-14 82.8 185 29.2
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 4.2e-14 82.4 146 31.5
Ca_10832_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002447 7.2e-14 81.6 155 28.4
CDE06G2009 Ceratophyllum demersum HOM05D001120 ORTHO05D002447 1.2e-13 80.9 132 33.3
FAN03G1813 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.2e-13 80.9 132 30.3
Glyma.09G151900 Glycine max HOM05D001120 ORTHO05D002447 1.2e-13 80.9 153 30.7
Thecc.06G021100 Theobroma cacao HOM05D001120 ORTHO05D002447 2.7e-13 79.7 131 32.1
TAR645G0006 Trochodendron aralioides HOM05D001120 ORTHO05D002447 3.6e-13 79.3 173 26.6
Sc18g0000610 Simmondsia chinensis HOM05D001120 ORTHO05D002447 4.7e-13 79.0 131 32.1
Sopen01g046430 Solanum pennellii HOM05D001120 ORTHO05D002447 8.0e-13 78.2 183 30.6
TWI23G0455 Tripterygium wilfordii HOM05D001120 ORTHO05D002447 8.0e-13 78.2 168 29.2
PGSC0003DMG400023798 Solanum tuberosum HOM05D001120 ORTHO05D002447 1.4e-12 77.4 167 29.9
PGSC0003DMG400023797 Solanum tuberosum HOM05D001120 ORTHO05D002447 3.0e-12 76.3 174 29.9
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 5.2e-12 75.5 137 27.7
Peaxi162Scf00148g00114 Petunia axillaris HOM05D001120 ORTHO05D002447 5.2e-12 75.5 146 31.5
BraA10t44942Z Brassica rapa HOM05D001120 ORTHO05D002447 6.7e-12 75.1 168 29.2
Solyc01g104020.2 Solanum lycopersicum HOM05D001120 ORTHO05D002447 6.7e-12 75.1 171 27.5
VMungo0464G0837 Vigna mungo HOM05D001120 ORTHO05D002447 6.7e-12 75.1 146 30.8
PGR042G1649 Punica granatum HOM05D001120 ORTHO05D002447 1.5e-11 73.9 182 26.9
A10p28950 Brassica napus HOM05D001120 ORTHO05D002447 2.6e-11 73.2 137 31.4
Sopen01g046420 Solanum pennellii HOM05D001120 ORTHO05D002447 3.3e-11 72.8 166 29.5
Medtr0050s0240 Medicago truncatula HOM05D001120 ORTHO05D002447 4.4e-11 72.4 186 28.0
Os05g0171200 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 9.7e-11 71.2 153 31.4
arahy.Tifrunner.gnm1.ann1.LIRE4J Arachis hypogaea HOM05D001120 ORTHO05D002447 1.3e-10 70.9 147 27.2
arahy.Tifrunner.gnm1.ann1.LMQR93 Arachis hypogaea HOM05D001120 ORTHO05D002447 1.3e-10 70.9 147 27.2
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 1.3e-10 70.9 141 28.4
PSO170G1098 Papaver somniferum HOM05D001120 ORTHO05D002447 1.7e-10 70.5 131 29.8
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 1.7e-10 70.5 179 27.9
Sp6g35710 Schrenkiella parvula HOM05D001120 ORTHO05D002447 1.7e-10 70.5 168 27.4
BcaC06g32466 Brassica carinata HOM05D001120 ORTHO05D002447 2.2e-10 70.1 137 29.2
SEGI_18751 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 2.2e-10 70.1 137 26.3
Lalb_Chr19g0131251 Lupinus albus HOM05D001120 ORTHO05D002447 2.8e-10 69.7 152 30.9
THA.LOC104824839 Tarenaya hassleriana HOM05D001120 ORTHO05D002447 2.8e-10 69.7 140 27.1
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 3.7e-10 69.3 170 25.9
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 4.8e-10 68.9 168 25.6
Os01g0172800 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 4.8e-10 68.9 131 32.8
Carub.0006s0612 Capsella rubella HOM05D001120 ORTHO05D002447 6.3e-10 68.6 168 28.0
Sed0000479 Sechium edule HOM05D001120 ORTHO05D002447 8.2e-10 68.2 176 25.6
arahy.Tifrunner.gnm1.ann1.1FS32P Arachis hypogaea HOM05D001120 ORTHO05D002447 1.1e-09 67.8 176 26.1
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 1.8e-09 67.0 149 27.5
Thhalv10015930m.g Eutrema salsugineum HOM05D001120 ORTHO05D002447 2.4e-09 66.6 133 29.3
BcaC06g32465 Brassica carinata HOM05D001120 ORTHO05D002447 3.1e-09 66.2 137 29.2
C09p69300 Brassica napus HOM05D001120 ORTHO05D002447 3.1e-09 66.2 137 29.2
BolC9t59674H Brassica oleracea HOM05D001120 ORTHO05D002447 3.1e-09 66.2 137 29.2
CARHR205960 Cardamine hirsuta HOM05D001120 ORTHO05D002447 3.1e-09 66.2 168 27.4
ClCG07G012680 Citrullus lanatus HOM05D001120 ORTHO05D002447 3.1e-09 66.2 178 25.8
TPR.G37175 Trifolium pratense HOM05D001120 ORTHO05D002447 3.1e-09 66.2 138 29.0
arahy.Tifrunner.gnm1.ann1.3J2MYH Arachis hypogaea HOM05D001120 ORTHO05D002447 4.1e-09 65.9 176 25.6
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.3e-09 65.5 135 28.1
Peaxi162Scf00332g00768 Petunia axillaris HOM05D001120 ORTHO05D002447 5.3e-09 65.5 150 27.3
Migut.K00480 Erythranthe guttata HOM05D001120 ORTHO05D002447 9.1e-09 64.7 144 26.4
SEGI_07159 Sequoiadendron giganteum HOM05D018424 ORTHO05D383985 9.1e-09 64.7 143 27.3
SEGI_26515 Sequoiadendron giganteum HOM05D018424 ORTHO05D385050 9.1e-09 64.7 143 27.3
PGSC0003DMG400000634 Solanum tuberosum HOM05D001120 ORTHO05D002447 9.1e-09 64.7 162 25.3
AL6G17410 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 1.2e-08 64.3 169 27.2
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.2e-08 64.3 141 27.0
PSO455G0274 Papaver somniferum HOM05D001120 ORTHO05D002447 1.2e-08 64.3 184 27.7
Solyc03g116590.3 Solanum lycopersicum HOM05D001120 ORTHO05D002447 1.2e-08 64.3 150 26.0
Sopen03g035500 Solanum pennellii HOM05D001120 ORTHO05D002447 1.2e-08 64.3 150 26.0
CsaV3_3G016450 Cucumis sativus L. HOM05D001120 ORTHO05D002447 1.6e-08 63.9 137 27.0
MELO3C006843.2 Cucumis melo HOM05D001120 ORTHO05D002447 2.0e-08 63.5 137 25.5
MBI14_g16338_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D002447 2.0e-08 63.5 148 33.8
AT5G07190 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 2.6e-08 63.2 173 26.6
Lj3g0018692 Lotus japonicus HOM05D001120 ORTHO05D002447 1.3e-07 60.8 100 34.0
Psat5g300960 Pisum sativum HOM05D001120 ORTHO05D002447 2.9e-07 59.7 134 29.9
Medtr2g103330 Medicago truncatula HOM05D001120 ORTHO05D002447 1.1e-06 57.8 96 35.4
TAR645G0001 Trochodendron aralioides HOM05D001120 ORTHO05D002447 1.1e-06 57.8 127 26.0
Potri.015G132900 Populus trichocarpa HOM05D001120 ORTHO05D002447 2.5e-06 56.6 133 29.3
SEGI_12405 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 2.5e-06 56.6 149 22.1


User provided reference genes

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