Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 7.4e-72 273.9 147 100.0
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 3.8e-68 261.5 147 95.2
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.0e-65 253.4 147 93.9
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.6e-53 212.2 129 82.9
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.1e-51 206.8 146 79.5
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.7e-48 194.5 108 88.0
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.7e-47 191.8 147 68.0
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 6.3e-47 191.0 144 75.7
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 8.2e-47 190.7 143 73.4
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 8.2e-47 190.7 147 71.4
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 1.8e-46 189.5 147 73.5
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 3.0e-41 172.2 137 65.0
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 1.1e-40 170.2 147 61.9
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 2.0e-40 169.5 147 62.6
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.0e-40 169.5 147 59.2
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 2.0e-40 169.5 147 62.6
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.3e-40 168.7 117 70.1
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 3.3e-40 168.7 137 63.5
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 5.7e-40 167.9 123 68.3
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 9.7e-40 167.2 144 58.3
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.2e-39 166.0 117 68.4
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 3.7e-39 165.2 143 60.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 3.7e-39 165.2 118 70.3
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 6.3e-39 164.5 121 68.6
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.1e-38 163.7 143 58.7
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.1e-38 163.7 124 66.9
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 1.4e-38 163.3 138 62.3
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.4e-38 163.3 123 65.9
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.8e-38 162.9 127 66.9
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.4e-38 162.5 118 69.5
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 5.3e-38 161.4 144 63.9
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 5.3e-38 161.4 114 68.4
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 7.0e-38 161.0 139 64.7
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.2e-37 160.2 126 62.7
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 1.2e-37 160.2 144 59.7
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.6e-37 159.8 128 64.8
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 1.6e-37 159.8 135 61.5
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 2.0e-37 159.5 117 64.1
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.5e-37 158.7 117 67.5
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.5e-37 158.7 126 64.3
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 3.5e-37 158.7 124 63.7
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 5.9e-37 157.9 135 61.5
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 5.9e-37 157.9 139 59.0
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 5.9e-37 157.9 137 60.6
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 7.7e-37 157.5 136 60.3
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 7.7e-37 157.5 116 65.5
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.0e-36 157.1 112 66.1
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.7e-36 156.4 137 61.3
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.7e-36 156.4 124 62.1
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.7e-36 156.4 116 64.7
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 5.0e-36 154.8 128 60.9
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 6.5e-36 154.5 125 62.4
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 8.5e-36 154.1 115 63.5
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 2.5e-35 152.5 147 63.3
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-35 152.1 128 58.6
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 7.2e-35 151.0 129 61.2
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 2.7e-34 149.1 118 63.6
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 6.1e-34 147.9 126 57.9
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 8.0e-34 147.5 138 58.7
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.0e-33 147.1 122 59.0
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.4e-33 146.7 118 63.6
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.4e-33 146.7 117 63.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.0e-33 145.6 116 63.8
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 6.7e-33 144.4 103 68.0
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 8.8e-33 144.1 127 56.7
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 8.8e-33 144.1 128 59.4
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 8.8e-33 144.1 128 57.0
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 1.2e-32 143.7 115 62.6
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 1.2e-32 143.7 112 65.2
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 1.2e-32 143.7 142 54.2
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 2.6e-32 142.5 112 58.0
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 5.7e-32 141.4 118 61.0
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.7e-32 140.6 119 60.5
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 9.7e-32 140.6 97 76.3
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 9.7e-32 140.6 117 59.0
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.3e-31 140.2 115 56.5
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.7e-31 139.8 120 60.0
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 1.7e-31 139.8 111 63.1
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.2e-31 139.4 115 56.5
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 3.7e-31 138.7 118 59.3
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 3.7e-31 138.7 118 59.3
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 3.7e-31 138.7 118 59.3
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 3.7e-31 138.7 126 56.3
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 4.8e-31 138.3 112 61.6
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 4.8e-31 138.3 112 61.6
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 6.3e-31 137.9 149 51.7
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 6.3e-31 137.9 121 57.9
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 8.2e-31 137.5 118 58.5
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 8.2e-31 137.5 118 58.5
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 8.2e-31 137.5 115 56.5
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 1.8e-30 136.3 112 59.8
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 3.1e-30 135.6 112 59.8
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.1e-30 135.2 109 62.4
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 9.1e-30 134.0 130 53.8
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 4.5e-29 131.7 111 59.5
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-28 130.6 121 54.5
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.8e-28 128.6 119 54.6
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 8.5e-28 127.5 121 52.1
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.1e-27 127.1 117 55.6
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.1e-27 127.1 114 55.3
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 2.5e-27 125.9 122 53.3
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 9.4e-27 124.0 127 52.0
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 2.0e-24 116.3 127 45.7
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 9.8e-24 114.0 117 49.6
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 4.8e-23 111.7 94 52.1
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.4e-22 109.4 121 47.9
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 5.4e-22 108.2 121 47.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 5.4e-22 108.2 117 47.9
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 5.9e-21 104.8 105 49.5
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.7e-20 103.2 121 45.5
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.3e-20 102.8 121 46.3
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 2.3e-20 102.8 114 53.5
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 2.9e-20 102.4 116 45.7
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 2.9e-20 102.4 116 46.6
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 1.5e-19 100.1 116 51.7
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 1.2e-13 80.5 130 36.2
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.6e-13 80.1 106 43.4
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.3e-12 76.3 122 38.5
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.5e-11 73.6 129 35.7
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.3e-11 72.4 98 44.9
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.2e-10 70.5 112 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 8.0e-10 67.8 124 36.3
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 8.0e-10 67.8 54 53.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.0e-09 67.4 98 42.9
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 5.8e-08 61.6 71 47.9
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 3.7e-07 58.9 50 52.0
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 3.7e-07 58.9 40 62.5
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 9.2e-06 54.3 157 28.7


User provided reference genes

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