Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 3.2e-139 498.4 252 100.0
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.2e-138 496.5 252 99.6
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 2.8e-135 485.3 252 96.8
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.1e-126 455.3 252 90.5
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 2.2e-124 449.1 252 90.9
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 4.9e-124 448.0 252 90.5
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.7e-122 442.2 275 83.6
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 1.1e-115 420.2 252 82.5
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 8.7e-105 384.0 252 75.4
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-103 379.4 252 74.2
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.8e-103 379.0 252 75.0
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 8.1e-103 377.5 253 75.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 2.6e-101 372.5 249 72.7
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 7.6e-101 370.9 254 72.8
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 2.2e-100 369.4 260 70.8
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 8.4e-100 367.5 249 73.5
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.1e-99 367.1 254 71.7
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.4e-99 366.7 254 71.3
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 5.4e-99 364.8 250 73.2
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 7.1e-99 364.4 252 72.6
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.2e-98 363.6 252 70.6
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.2e-98 363.6 252 70.6
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.6e-98 363.2 252 71.8
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 2.7e-98 362.5 254 71.7
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 3.5e-98 362.1 252 70.2
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 3.5e-98 362.1 251 72.1
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 4.6e-98 361.7 252 70.6
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 6.0e-98 361.3 253 70.4
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 7.9e-98 360.9 251 70.9
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 7.9e-98 360.9 251 70.1
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.3e-97 360.1 262 69.5
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.3e-97 359.4 267 68.2
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 3.0e-97 359.0 258 70.9
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 6.7e-97 357.8 261 68.6
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 6.7e-97 357.8 251 70.1
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 8.7e-97 357.5 249 72.3
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 8.7e-97 357.5 254 70.5
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 1.1e-96 357.1 253 70.0
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.5e-96 356.7 252 71.0
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 3.3e-96 355.5 254 68.9
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 4.3e-96 355.1 258 69.4
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 4.3e-96 355.1 258 69.8
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 5.6e-96 354.8 251 68.1
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 5.6e-96 354.8 252 69.8
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 9.6e-96 354.0 250 70.0
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 9.6e-96 354.0 250 70.0
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.6e-95 353.2 252 70.2
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 2.1e-95 352.8 250 69.6
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 2.8e-95 352.4 253 68.8
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 6.2e-95 351.3 253 70.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 8.1e-95 350.9 235 74.9
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 8.1e-95 350.9 235 74.9
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 1.8e-94 349.7 258 68.6
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.8e-94 349.7 251 68.5
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 3.1e-94 349.0 254 69.7
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 3.1e-94 349.0 251 69.7
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.1e-94 349.0 253 69.2
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 5.3e-94 348.2 256 69.1
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 5.3e-94 348.2 263 66.2
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 6.9e-94 347.8 252 69.4
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.2e-93 347.1 256 68.4
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 2.6e-93 345.9 250 66.0
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 68.8
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 68.8
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 69.6
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 69.6
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 3.4e-93 345.5 257 68.5
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 7.6e-93 344.4 258 69.4
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 9.9e-93 344.0 256 68.0
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 9.9e-93 344.0 256 68.0
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.7e-92 343.2 255 67.5
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 2.9e-92 342.4 251 68.1
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 3.8e-92 342.0 250 68.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 4.9e-92 341.7 258 66.7
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 2.5e-91 339.3 232 71.1
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 2.5e-91 339.3 255 67.8
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 2.1e-90 336.3 253 66.4
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 2.7e-90 335.9 259 64.5
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 6.0e-90 334.7 259 64.5
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 1.0e-89 334.0 254 67.3
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 3.0e-89 332.4 227 71.4
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 3.9e-89 332.0 308 59.1
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 5.1e-89 331.6 254 66.9
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 6.7e-89 331.3 227 69.6
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.1e-88 330.5 269 64.3
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.5e-88 330.1 244 69.3
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 5.6e-88 328.2 236 69.1
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 7.4e-88 327.8 250 66.0
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 6.2e-87 324.7 252 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 8.2e-87 324.3 252 65.1
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.4e-86 323.6 260 65.4
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 4.0e-86 322.0 240 67.5
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 6.9e-86 321.2 237 64.6
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 4.5e-85 318.5 254 63.8
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 3.8e-84 315.5 253 62.8
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 9.3e-83 310.8 229 68.6
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.6e-82 310.1 237 67.9
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 3.9e-81 305.4 201 74.1
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 5.1e-81 305.1 237 65.0
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 6.7e-81 304.7 232 65.9
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 2.2e-79 299.7 255 62.0
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.5e-77 293.5 203 70.9
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.1e-75 287.3 253 56.5
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 3.2e-75 285.8 256 60.5
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.5e-75 285.0 257 60.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-73 280.4 239 62.3
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 6.9e-70 268.1 192 69.8
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 2.0e-69 266.5 161 78.9
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 7.7e-69 264.6 247 57.9
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 5.0e-68 261.9 205 64.4
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 5.5e-67 258.5 235 58.7
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.1e-66 256.5 243 56.0
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 5.3e-62 241.9 218 58.3
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 7.0e-62 241.5 177 67.2
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 2.2e-60 236.5 185 63.2
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 3.2e-59 232.6 239 54.0
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 2.2e-55 219.9 256 52.0
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 6.5e-52 208.4 115 87.0
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.1e-51 207.6 218 53.7
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 2.0e-45 186.8 135 63.7
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 1.3e-44 184.1 147 64.6
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 9.4e-43 177.9 101 80.2
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.7e-37 159.8 263 38.0
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 7.7e-37 158.3 140 57.1
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 7.2e-35 151.8 140 55.7
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.2e-29 134.4 95 69.5
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 1.0e-25 121.3 65 80.0
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 9.8e-24 114.8 130 48.5
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 2.4e-22 110.2 57 86.0
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.1e-19 101.3 76 67.1
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 7.3e-19 98.6 73 72.6
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 7.3e-19 98.6 54 77.8
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 5.2e-17 92.4 72 65.3
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.4e-16 89.4 77 59.7
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.0e-12 78.2 70 60.0
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 5.6e-11 72.4 43 79.1
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-09 68.2 60 61.7
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 6.8e-09 65.5 67 52.2
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 3.7e-07 59.7 110 41.8
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 7.1e-06 55.5 201 26.4
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 7.1e-06 55.5 199 26.1
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 9.2e-06 55.1 197 25.4


User provided reference genes

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