Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 2.0e-68 262.3 133 100.0
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 3.8e-67 258.1 133 98.5
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 4.6e-65 251.1 133 95.5
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.4e-58 229.6 134 87.3
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.7e-57 225.3 134 86.6
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.6e-57 224.9 134 86.6
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.4e-48 196.4 133 74.4
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 2.3e-48 195.7 132 75.8
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 6.7e-48 194.1 133 72.9
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 2.0e-47 192.6 133 73.7
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 7.4e-47 190.7 124 75.0
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 9.7e-47 190.3 124 74.2
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 9.7e-47 190.3 124 73.4
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 6.3e-46 187.6 130 70.8
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 2.4e-45 185.7 124 74.2
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 3.1e-45 185.3 133 69.2
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 9.1e-45 183.7 104 88.5
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 9.1e-45 183.7 126 72.2
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-44 183.3 121 75.2
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 2.0e-44 182.6 125 71.2
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 7.7e-44 180.6 128 68.8
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 1.3e-43 179.9 133 65.4
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 2.9e-43 178.7 137 66.4
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 3.8e-43 178.3 122 71.3
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 6.5e-43 177.6 122 71.3
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.1e-42 176.8 121 70.2
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 1.9e-42 176.0 128 66.4
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.9e-42 176.0 131 65.6
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.2e-42 175.3 133 67.7
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 3.2e-42 175.3 128 65.6
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 5.5e-42 174.5 121 69.4
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 5.5e-42 174.5 120 70.0
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 9.4e-42 173.7 123 66.7
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 1.2e-41 173.3 128 64.8
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 1.2e-41 173.3 128 65.6
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.6e-41 172.9 123 68.3
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.6e-41 172.9 131 64.1
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 2.7e-41 172.2 126 66.7
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 6.1e-41 171.0 127 66.1
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 8.0e-41 170.6 121 68.6
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 1.4e-40 169.9 120 70.0
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.3e-40 169.1 112 76.8
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 3.0e-40 168.7 126 67.5
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 5.2e-40 167.9 126 65.1
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 5.2e-40 167.9 128 64.1
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 5.2e-40 167.9 122 69.7
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 6.7e-40 167.5 126 65.9
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 6.7e-40 167.5 122 70.5
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 8.8e-40 167.2 126 65.1
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 8.8e-40 167.2 128 63.3
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.1e-39 166.8 128 62.5
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 1.1e-39 166.8 126 65.1
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.0e-39 166.0 122 68.9
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 2.6e-39 165.6 126 66.7
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 5.7e-39 164.5 123 64.2
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 5.7e-39 164.5 123 67.5
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 7.4e-39 164.1 122 68.0
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.3e-38 163.3 121 63.6
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 1.7e-38 162.9 125 61.6
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 2.2e-38 162.5 132 59.1
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 2.8e-38 162.2 121 62.8
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-38 162.2 121 62.8
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-38 162.2 121 62.8
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 2.8e-38 162.2 121 62.8
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 2.8e-38 162.2 130 60.0
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 2.8e-38 162.2 138 64.5
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 4.8e-38 161.4 121 65.3
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 6.3e-38 161.0 120 65.0
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 6.3e-38 161.0 121 62.8
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 8.2e-38 160.6 122 64.8
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 8.2e-38 160.6 120 64.2
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 8.2e-38 160.6 120 64.2
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 1.1e-37 160.2 121 61.2
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 1.8e-37 159.5 131 60.3
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 3.1e-37 158.7 121 61.2
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 4.1e-37 158.3 121 61.2
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 7.0e-37 157.5 121 64.5
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 1.2e-36 156.8 129 57.4
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 1.2e-36 156.8 126 61.1
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.2e-36 156.8 120 64.2
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.6e-36 156.4 121 60.3
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.0e-36 156.0 102 75.5
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 1.3e-35 153.3 125 60.0
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.2e-35 152.5 121 62.8
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 2.9e-35 152.1 120 62.5
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 8.5e-35 150.6 122 60.7
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.9e-34 149.4 169 49.7
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 4.2e-34 148.3 128 57.8
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.2e-33 146.7 153 54.2
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.7e-33 145.6 105 66.7
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.4e-32 143.3 105 65.7
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 1.3e-30 136.7 128 57.0
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 4.8e-30 134.8 104 69.2
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 3.1e-29 132.1 105 64.8
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.2e-28 130.2 165 44.8
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 3.8e-27 125.2 117 54.7
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.1e-26 123.6 109 56.0
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 1.9e-26 122.9 103 61.2
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 5.5e-26 121.3 92 66.3
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 7.2e-26 120.9 100 61.0
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 2.1e-25 119.4 93 64.5
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 3.6e-25 118.6 101 58.4
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 6.1e-25 117.9 118 48.3
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 8.0e-25 117.5 100 58.0
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 8.0e-25 117.5 120 48.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 5.2e-24 114.8 96 60.4
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.0e-23 112.8 100 55.0
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 2.0e-23 112.8 95 61.1
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 5.7e-23 111.3 100 54.0
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 2.2e-22 109.4 92 62.0
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.9e-19 99.0 103 50.5
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.6e-17 93.2 88 53.4
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 1.8e-16 89.7 99 45.5
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 5.2e-16 88.2 101 38.6
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 3.4e-15 85.5 69 59.4
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 1.3e-14 83.6 90 53.3
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 3.7e-14 82.0 74 55.4
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.8e-13 79.7 92 46.7
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 4.1e-13 78.6 80 56.2
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 1.4e-08 63.5 112 27.7
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 4.0e-08 62.0 51 56.9


User provided reference genes

Program Settings