Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.2e-121 439.9 224 100.0
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.2e-121 439.9 224 100.0
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 5.9e-121 437.6 224 99.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.5e-111 404.4 232 91.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 7.5e-108 394.0 233 87.6
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.3e-101 372.5 224 87.9
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 2.0e-92 342.8 210 82.4
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 9.8e-92 340.5 219 79.0
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 9.2e-90 334.0 248 72.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 7.7e-89 330.9 224 75.4
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 3.8e-88 328.6 224 75.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.0e-88 328.2 224 74.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 7.3e-87 324.3 225 74.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.1e-86 322.8 224 74.6
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 8.0e-86 320.9 223 74.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 7.5e-84 314.3 225 71.1
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.0e-82 307.8 225 72.0
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 5.9e-81 304.7 204 75.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.0e-80 303.9 222 69.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 3.0e-80 302.4 165 94.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 6.6e-80 301.2 224 68.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.5e-79 300.1 222 71.6
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.2e-76 290.4 227 68.7
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-76 290.0 211 70.1
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.5e-76 290.0 224 67.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.0e-76 289.7 206 71.8
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.6e-76 289.3 211 70.1
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 4.4e-76 288.5 225 66.2
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.1e-74 282.0 224 67.9
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 6.0e-73 278.1 211 68.2
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.3e-72 276.2 222 66.7
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.1e-70 269.6 218 62.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.8e-70 269.2 235 61.3
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 4.7e-70 268.5 224 62.9
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 4.7e-70 268.5 228 61.0
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 5.2e-69 265.0 202 66.3
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 6.8e-69 264.6 228 61.0
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.5e-68 263.5 226 63.3
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.0e-68 263.1 223 63.7
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-67 260.4 226 63.3
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.3e-67 260.4 219 61.2
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 4.9e-67 258.5 203 63.5
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.4e-66 256.9 223 60.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.2e-65 253.8 212 63.7
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.7e-65 252.7 221 59.3
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.7e-65 252.7 225 61.8
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.7e-65 252.7 223 60.5
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.3e-64 250.4 222 59.0
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.9e-64 248.8 221 58.4
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 5.1e-64 248.4 211 58.3
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.9e-63 246.5 226 57.1
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.9e-63 246.5 226 58.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 4.3e-63 245.4 257 53.7
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 1.2e-62 243.8 189 64.6
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.6e-62 243.4 223 58.3
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.6e-62 243.4 229 55.0
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.6e-62 243.4 216 59.7
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 6.2e-62 241.5 224 56.7
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.2e-62 241.5 220 59.1
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.4e-61 240.4 220 58.2
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.3e-61 239.6 238 54.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.3e-61 239.6 211 57.3
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.1e-61 239.2 212 59.0
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 4.0e-61 238.8 224 56.2
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 5.2e-61 238.4 240 58.3
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.9e-61 237.7 235 53.6
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.2e-60 237.3 228 54.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.5e-60 236.9 211 57.8
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.5e-60 236.9 233 54.1
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.5e-60 236.9 211 57.3
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.6e-60 236.1 210 60.5
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.4e-60 235.7 190 62.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.4e-58 230.3 235 53.2
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.2e-58 229.2 211 55.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.2e-57 227.3 232 55.2
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 1.6e-57 226.9 210 55.2
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.5e-57 225.7 232 55.2
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 3.5e-57 225.7 232 55.2
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.0e-57 224.9 204 62.3
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 7.8e-57 224.6 211 55.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 7.8e-57 224.6 211 55.9
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 7.8e-57 224.6 233 55.4
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.0e-56 224.2 218 56.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.7e-56 223.4 223 55.2
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.7e-56 223.4 307 46.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 3.0e-56 222.6 188 60.1
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.1e-55 220.7 199 59.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.5e-55 220.3 160 69.4
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.5e-55 219.5 183 62.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 9.6e-55 217.6 170 67.1
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.2e-54 217.2 217 53.9
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.8e-54 216.1 244 48.8
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-54 215.7 234 51.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.4e-53 213.8 227 50.2
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 5.2e-53 211.8 158 72.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.2e-53 211.8 223 53.8
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 6.8e-53 211.5 342 40.6
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.0e-52 209.9 266 50.0
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.0e-52 209.9 209 51.7
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.4e-52 208.8 229 49.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 2.9e-51 206.1 165 62.4
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.1e-50 204.1 216 51.4
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.2e-50 202.2 222 48.6
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 7.8e-49 198.0 165 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.7e-48 196.8 215 48.4
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 5.1e-48 195.3 189 56.1
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 8.7e-48 194.5 226 47.8
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 4.3e-47 192.2 222 51.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.8e-46 189.5 188 52.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.8e-45 186.8 131 69.5
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.1e-45 186.0 261 43.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.2e-44 184.1 138 68.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 6.4e-43 178.3 142 63.4
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.2e-41 174.1 252 43.7
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 6.6e-40 168.3 213 39.4
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.5e-39 166.4 129 67.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 5.6e-39 165.2 112 74.1
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.4e-37 160.6 161 57.8
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 2.0e-36 156.8 164 54.9
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.9e-33 144.8 117 59.8
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-31 140.6 144 50.7
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.0e-27 127.9 162 45.7
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 4.9e-27 125.6 218 39.0
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-25 120.9 87 67.8
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 5.1e-24 115.5 213 35.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.7e-23 112.1 92 60.9
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 7.4e-23 111.7 218 36.7
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 4.8e-22 109.0 100 57.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.9e-21 105.1 110 55.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 4.5e-20 102.4 216 32.4
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.0e-16 91.3 210 32.9
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.9e-15 87.0 57 75.4
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.9e-15 87.0 91 58.2
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 3.3e-15 86.3 99 46.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.3e-15 85.9 174 37.4
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.6e-12 76.6 84 53.6
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 4.5e-12 75.9 87 51.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 4.5e-12 75.9 87 51.7
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.9e-12 75.5 66 60.6
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 1.0e-11 74.7 215 29.3
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.0e-08 64.7 70 44.3
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.0e-08 64.7 74 55.4
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.8e-08 63.9 91 44.0
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 2.3e-08 63.5 64 51.6
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 3.3e-07 59.7 200 28.0


User provided reference genes

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