Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.7e-154 549.3 272 100.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-134 483.4 265 93.2
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-134 483.4 265 93.2
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.1e-134 483.4 265 93.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.1e-134 483.4 265 93.2
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.6e-134 481.1 265 92.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.6e-134 481.1 265 92.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.6e-134 481.1 265 92.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 4.8e-133 478.0 265 92.5
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 6.2e-133 477.6 265 92.1
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.1e-132 476.9 265 92.1
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.4e-132 476.5 265 91.7
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.4e-132 475.7 259 93.4
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 4.0e-132 474.9 265 92.5
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 5.8e-131 471.1 265 91.3
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 9.9e-131 470.3 265 91.7
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.3e-130 469.9 265 91.7
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.3e-130 469.9 265 91.7
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.3e-130 469.9 265 91.7
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.3e-130 469.9 265 91.7
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.3e-130 469.9 265 91.7
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 4.9e-130 468.0 265 91.3
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.1e-129 466.8 261 91.2
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.2e-129 465.3 265 90.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 4.2e-129 464.9 265 90.2
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 2.1e-128 462.6 265 90.6
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-128 461.8 265 90.2
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-128 461.8 265 90.2
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-128 461.8 265 90.2
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.0e-127 460.3 265 90.2
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.8e-127 459.5 262 90.8
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.9e-124 447.6 266 86.8
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.4e-113 413.3 267 83.5
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.2e-112 410.2 228 90.8
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 2.3e-111 406.0 268 81.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.3e-110 401.7 265 81.5
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 5.3e-108 394.8 265 80.0
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.8e-103 379.8 265 78.9
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.1e-102 377.1 234 85.5
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-101 373.6 253 79.4
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 5.3e-100 368.2 216 89.8
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.7e-98 363.2 265 75.8
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.6e-96 355.5 202 91.1
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.5e-90 334.3 270 70.0
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 9.1e-84 314.3 259 69.9
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.6e-83 313.5 265 66.4
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 2.7e-80 302.8 240 72.9
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 6.1e-80 301.6 168 92.9
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.3e-74 283.9 167 88.6
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.5e-74 281.6 165 85.5
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 4.2e-73 278.9 165 87.3
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.6e-72 276.9 154 92.9
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-71 271.6 159 87.4
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 9.8e-70 267.7 234 64.1
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.1e-65 254.2 202 70.8
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 8.3e-61 238.0 247 54.7
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 2.4e-60 236.5 130 93.8
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 3.2e-60 236.1 266 55.3
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 5.9e-59 231.9 128 89.1
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 4.3e-57 225.7 124 94.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 2.8e-56 223.0 136 83.1
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 8.0e-56 221.5 128 86.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-54 216.9 384 40.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.3e-49 199.1 138 78.3
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.4e-47 194.1 137 77.4
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-42 177.9 169 60.4
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-42 176.0 190 57.9
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 7.3e-41 171.8 88 97.7
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.6e-40 170.6 90 95.6
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 6.2e-40 168.7 89 94.4
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.4e-39 167.5 98 86.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.1e-39 166.4 94 89.4
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 1.2e-38 164.5 89 93.3
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.2e-38 164.5 197 50.3
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-38 162.9 122 70.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 4.4e-38 162.5 91 87.9
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.3e-37 161.0 98 85.7
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 1.3e-37 161.0 178 46.1
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-36 157.9 156 59.0
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-36 157.9 102 77.5
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.2e-36 156.4 93 84.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.2e-36 156.4 93 84.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-34 151.0 150 59.3
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-34 151.0 90 82.2
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 8.9e-31 138.3 81 84.0
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 4.9e-29 132.5 216 43.5
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.9e-29 132.5 248 41.9
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 5.4e-28 129.0 112 67.0
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 7.8e-27 125.2 104 66.3
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.1e-25 121.3 129 57.4
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 3.3e-25 119.8 110 62.7
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.3e-25 119.4 139 52.5
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 4.8e-24 115.9 72 81.9
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.1e-24 115.2 64 89.1
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.1e-24 115.2 92 73.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 8.1e-24 115.2 64 89.1
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 8.1e-24 115.2 64 89.1
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-22 110.5 72 75.0
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.5e-22 109.4 64 85.9
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 3.2e-20 103.2 64 78.1
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 9.3e-20 101.7 55 85.5
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.0e-18 96.7 61 82.0
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 9.0e-15 85.1 40 95.0
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.0e-14 84.0 67 67.2
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.6e-14 83.6 91 54.9
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 7.6e-14 82.0 50 78.0
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-13 80.1 45 86.7
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.9e-13 80.1 45 86.7
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-12 76.3 92 56.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 9.3e-12 75.1 40 87.5
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.3e-10 71.2 48 77.1
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-08 64.7 32 87.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-08 64.7 32 87.5
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 8.1e-08 62.0 33 84.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.4e-07 61.2 36 80.6
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.4e-07 60.5 40 77.5
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.8e-06 55.8 30 86.7


User provided reference genes

Program Settings