Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 0.0e+00 1209.5 611 100.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 0.0e+00 1199.5 611 99.3
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 0.0e+00 1172.1 611 96.9
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 0.0e+00 1077.8 611 87.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 0.0e+00 1075.5 611 88.4
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.1e-311 1071.6 612 87.4
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.1e-291 1006.1 606 84.2
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.4e-257 892.9 612 73.4
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 5.0e-255 884.4 612 72.2
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.8e-252 875.9 613 72.8
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.8e-252 875.9 612 72.9
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 8.2e-250 867.1 614 70.0
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.8e-249 865.9 613 71.0
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 3.1e-249 865.1 614 71.2
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 6.9e-249 864.0 595 73.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.2e-248 863.2 612 71.7
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.0e-248 862.4 610 72.1
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 8.5e-247 857.1 623 69.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.6e-245 851.7 613 69.5
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 5.1e-244 847.8 616 69.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 8.8e-244 847.0 612 69.4
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.3e-243 845.1 611 68.9
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.4e-243 844.7 611 69.7
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 7.4e-243 844.0 617 68.7
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.2e-242 842.4 617 69.9
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.1e-241 840.1 613 69.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 2.4e-241 839.0 616 68.7
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 5.3e-241 837.8 615 69.3
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-241 837.4 613 68.5
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.2e-240 836.6 616 68.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.2e-240 836.6 630 68.3
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.0e-240 835.9 614 68.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.3e-239 833.2 689 62.8
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 2.2e-239 832.4 613 67.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.9e-239 832.0 614 69.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.9e-239 832.0 614 69.1
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 5.0e-239 831.2 624 68.4
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.1e-238 830.1 614 68.7
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.4e-238 829.7 614 68.2
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.9e-238 829.3 617 67.9
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.9e-238 829.3 617 67.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.5e-238 828.9 615 67.6
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 4.2e-238 828.2 615 67.8
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 7.2e-238 827.4 617 69.4
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.1e-237 825.9 615 69.1
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.0e-236 823.5 615 68.1
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.0e-236 823.5 612 69.3
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.0e-236 823.5 612 67.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-236 823.2 616 68.2
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.4e-236 823.2 617 66.8
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.9e-236 821.6 612 66.8
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 8.8e-236 820.5 612 68.3
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.0e-235 819.3 614 67.6
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.3e-234 816.6 614 67.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 4.1e-233 811.6 613 66.6
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.1e-233 811.6 613 66.4
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.2e-232 810.1 612 67.2
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.2e-232 810.1 613 66.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.0e-232 809.3 613 66.6
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.6e-232 808.9 613 66.2
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.5e-232 808.5 611 66.9
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 4.5e-232 808.1 612 66.5
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.1e-230 803.5 613 66.1
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.5e-230 802.4 618 67.0
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.2e-230 802.0 615 66.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.2e-230 802.0 618 66.8
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.6e-229 799.7 613 65.1
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.6e-229 798.5 614 67.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 8.0e-229 797.3 612 66.5
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.4e-228 796.6 613 65.3
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 5.2e-228 794.7 613 65.7
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.0e-227 792.7 614 66.0
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 7.5e-227 790.8 608 65.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.3e-226 790.0 604 66.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.9e-222 776.2 568 69.0
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 9.4e-222 773.9 569 68.2
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 3.6e-221 771.9 567 68.6
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.2e-219 766.9 611 64.6
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 4.4e-219 765.0 743 56.7
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.8e-217 759.6 614 64.5
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.9e-216 754.6 618 62.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.0e-215 753.8 597 65.0
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.7e-215 753.1 618 62.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.2e-214 748.4 547 68.4
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.1e-213 746.1 579 66.8
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 6.1e-213 744.6 546 68.5
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.8e-196 689.9 613 57.1
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 7.0e-193 677.9 613 60.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.9e-190 669.8 615 56.4
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.3e-190 669.1 618 59.1
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.1e-185 652.1 500 67.8
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-174 616.7 685 52.3
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.4e-172 610.5 677 49.0
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.3e-167 594.0 526 60.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 7.6e-163 578.2 491 62.7
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 7.6e-155 551.6 511 56.6
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.4e-148 530.8 362 74.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.4e-145 520.8 387 67.2
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-137 493.8 384 65.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 3.8e-130 469.5 360 67.8
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 8.5e-122 441.8 232 97.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 6.3e-117 425.6 359 61.8
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.8e-116 424.1 321 67.0
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 5.3e-116 422.5 437 54.2
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.4e-108 397.9 655 38.8
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-107 392.9 387 55.6
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.9e-106 390.2 257 75.9
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.8e-103 379.0 257 73.2
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.8e-100 370.9 256 71.9
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 4.7e-96 356.3 244 70.1
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 9.2e-84 315.5 632 35.6
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 3.9e-74 283.5 179 74.9
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 6.4e-61 239.6 223 59.6
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-56 222.6 220 55.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.1e-52 212.2 169 66.9
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 6.9e-47 193.0 159 61.6
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 7.1e-44 183.0 110 80.9
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.1e-44 183.0 111 80.2
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-43 181.8 111 81.1
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-43 181.4 107 81.3
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-41 175.6 111 77.5
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-41 174.9 109 76.1
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 9.3e-36 156.0 104 68.3
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-35 154.5 134 63.4
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-32 144.8 100 72.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.3e-29 135.6 82 75.6
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-28 129.8 129 52.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-28 129.8 83 74.7
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 3.0e-26 124.4 97 59.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.0e-26 124.4 97 59.8
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 3.3e-25 120.9 519 26.0
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 5.3e-23 113.6 134 48.5
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 5.3e-23 113.6 129 49.6
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-22 112.5 69 79.7
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-22 111.7 71 69.0
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-20 105.1 66 77.3
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-18 98.2 55 72.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-17 95.9 88 52.3
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.2e-16 91.7 144 40.3
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 3.8e-13 80.9 55 67.3
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-11 73.6 41 80.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 28.6
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.9e-10 70.9 50 68.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-10 70.9 40 77.5
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.0e-09 68.6 41 78.0
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.1e-07 62.8 45 73.3
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.4e-07 62.4 41 68.3
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-06 58.9 46 63.0
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 7.7e-06 56.6 51 51.0


User provided reference genes

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