Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 1.9e-130 469.2 234 100.0
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 1.0e-115 420.2 209 99.0
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 9.5e-114 413.7 209 97.6
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 2.2e-102 375.9 219 86.8
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 6.4e-86 321.2 216 75.5
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 4.2e-85 318.5 219 72.1
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 7.1e-85 317.8 219 72.1
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 7.1e-85 317.8 217 74.7
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 1.2e-84 317.0 218 72.0
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 3.5e-84 315.5 218 72.5
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.5e-84 315.5 218 72.5
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.5e-84 315.5 218 72.5
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 3.5e-84 315.5 219 70.3
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 4.6e-84 315.1 214 73.4
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 1.0e-83 313.9 220 71.8
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 1.7e-83 313.2 219 69.9
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 2.3e-83 312.8 215 70.7
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 2.3e-83 312.8 222 69.8
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 1.1e-82 310.5 218 72.5
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 1.9e-82 309.7 218 70.6
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 2.5e-82 309.3 214 73.4
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 3.3e-82 308.9 214 71.0
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 3.3e-82 308.9 218 72.9
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 3.3e-82 308.9 218 70.6
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 4.3e-82 308.5 218 71.6
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 5.6e-82 308.1 218 70.6
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 5.6e-82 308.1 219 69.9
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 5.6e-82 308.1 219 71.7
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 7.3e-82 307.8 218 70.2
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 7.3e-82 307.8 218 70.6
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.3e-81 307.0 222 68.5
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 1.6e-81 306.6 218 71.1
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 2.1e-81 306.2 217 70.0
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 4.8e-81 305.1 223 68.6
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 6.2e-81 304.7 230 65.7
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 6.2e-81 304.7 220 68.6
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 1.1e-80 303.9 217 67.7
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.4e-80 303.5 218 70.2
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 1.8e-80 303.1 213 71.8
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 5.3e-80 301.6 226 66.8
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 5.3e-80 301.6 214 69.6
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 5.3e-80 301.6 224 67.9
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 6.9e-80 301.2 221 68.3
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 6.9e-80 301.2 220 68.2
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 6.9e-80 301.2 215 70.2
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 9.0e-80 300.8 222 68.5
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 1.2e-79 300.4 216 68.5
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 1.2e-79 300.4 220 69.1
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 2.6e-79 299.3 219 68.0
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 3.4e-79 298.9 212 68.4
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 4.5e-79 298.5 216 69.0
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 4.5e-79 298.5 218 69.7
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 5.8e-79 298.1 214 71.5
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 5.8e-79 298.1 214 71.5
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 9.9e-79 297.4 214 71.5
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 9.9e-79 297.4 222 67.6
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 2.2e-78 296.2 213 69.0
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 8.4e-78 294.3 220 66.4
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 1.4e-77 293.5 267 57.7
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 1.4e-77 293.5 220 67.7
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 1.9e-77 293.1 246 63.8
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 3.2e-77 292.4 215 68.8
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 4.2e-77 292.0 220 66.8
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 4.2e-77 292.0 218 66.5
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 4.2e-77 292.0 241 62.7
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 5.4e-77 291.6 216 69.0
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 9.3e-77 290.8 218 67.4
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 6.0e-76 288.1 214 66.4
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 7.9e-76 287.7 215 66.0
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 1.0e-75 287.3 230 63.9
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 1.8e-75 286.6 214 65.9
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 3.0e-75 285.8 216 65.7
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 1.9e-74 283.1 219 65.8
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 1.9e-74 283.1 218 63.8
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 4.3e-74 282.0 215 64.2
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 1.3e-73 280.4 216 63.9
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 1.3e-73 280.4 216 63.9
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 3.6e-73 278.9 216 63.4
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 4.8e-73 278.5 215 64.2
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 4.8e-73 278.5 209 66.5
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 1.4e-72 276.9 212 64.6
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 1.8e-72 276.6 172 75.6
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 2.4e-72 276.2 141 97.9
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 4.0e-72 275.4 217 65.4
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 5.3e-72 275.0 217 63.6
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 5.3e-72 275.0 215 64.2
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 2.6e-71 272.7 216 64.8
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 2.6e-71 272.7 232 62.5
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 1.9e-69 266.5 214 60.3
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 1.9e-69 266.5 214 60.3
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 2.4e-69 266.2 215 60.9
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 4.2e-69 265.4 214 61.2
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 4.2e-69 265.4 173 72.8
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 4.2e-69 265.4 141 92.9
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 1.6e-68 263.5 141 92.2
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 2.5e-66 256.1 248 55.6
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 4.8e-65 251.9 169 67.5
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 2.5e-61 239.6 207 56.0
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 1.3e-59 233.8 173 64.2
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 2.8e-57 226.1 141 78.0
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 3.7e-57 225.7 174 59.8
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 2.9e-54 216.1 130 77.7
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 3.2e-53 212.6 241 50.2
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 5.1e-51 205.3 130 74.6
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 1.5e-50 203.8 175 54.9
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 1.9e-50 203.4 130 74.6
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 1.5e-47 193.7 174 55.2
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 2.9e-46 189.5 170 53.5
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.9e-45 186.8 184 51.6
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 3.9e-43 179.1 130 66.2
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.3e-38 164.1 98 75.5
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 7.2e-37 158.3 132 64.4
Dinv09041 Davidia involucrata HOM05D006166 ORTHO05D000293 1.4e-35 154.1 115 73.0
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 1.8e-35 153.7 104 68.3
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 1.1e-29 134.4 103 66.0
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.5e-29 134.0 131 50.4
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 1.6e-28 130.6 82 74.4
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 4.7e-28 129.0 101 63.4
Haze_10661 Corylus avellana HOM05D006166 ORTHO05D007663 4.4e-26 122.5 92 71.7
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 1.1e-24 117.9 81 66.7
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 1.2e-20 104.4 56 87.5
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 6.8e-19 98.6 165 33.3
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 9.8e-18 94.7 47 93.6
CDE05G1058 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 9.8e-18 94.7 62 71.0
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 1.7e-17 94.0 56 76.8
SHI16502 Sapria himalayana HOM05D006166 ORTHO05D007663 1.3e-09 67.8 78 50.0


User provided reference genes

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