Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 7.5e-24 112.8 51 100.0
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-17 90.9 47 87.2
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-17 90.9 47 87.2
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-17 90.9 47 87.2
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-17 90.9 47 87.2
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.1e-17 90.9 47 87.2
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.4e-16 87.4 47 85.1
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-16 86.3 49 79.6
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.2e-15 84.7 46 80.4
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.2e-15 84.7 47 83.0
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 6.4e-15 83.2 50 80.0
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.9e-14 81.6 50 78.0
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.9e-14 81.6 50 78.0
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.9e-14 81.6 50 78.0
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.9e-14 81.6 47 76.6
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 5.4e-14 80.1 50 76.0
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.4e-14 80.1 50 78.0
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 5.4e-14 80.1 50 78.0
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 5.4e-14 80.1 50 78.0
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 9.2e-14 79.3 47 78.7
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 9.2e-14 79.3 47 78.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.2e-13 79.0 51 72.5
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 2.7e-13 77.8 50 74.0
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.7e-13 77.8 50 74.0
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-13 77.4 50 76.0
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-13 77.4 50 76.0
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-13 77.4 50 76.0
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 4.6e-13 77.0 49 75.5
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 7.8e-13 76.3 49 73.5
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-12 75.5 49 73.5
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-12 75.5 49 73.5
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.7e-12 75.1 52 71.2
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.7e-12 75.1 50 76.0
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 1.7e-12 75.1 50 76.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.0e-12 74.3 49 73.5
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 3.0e-12 74.3 50 68.0
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 3.9e-12 73.9 49 73.5
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 5.1e-12 73.6 50 74.0
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.5e-11 71.2 38 84.2
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 7.3e-11 69.7 49 71.4
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.6e-10 68.6 49 69.4
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.6e-10 68.6 49 69.4
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.6e-10 68.6 49 69.4
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 2.1e-10 68.2 45 71.1
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.8e-10 67.0 51 64.7
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 6.2e-10 66.6 35 85.7
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 8.1e-10 66.2 38 78.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.1e-09 65.9 49 69.4
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.1e-09 65.9 49 69.4
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.4e-09 64.7 35 82.9
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.0e-08 61.6 35 80.0
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.0e-08 61.6 48 64.6
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.4e-07 56.6 48 58.3
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 8.4e-07 56.2 45 55.6
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.2e-06 54.3 33 72.7
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 4.2e-06 53.9 38 68.4
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 4.2e-06 53.9 35 68.6
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 7.1e-06 53.1 44 61.4


User provided reference genes

Program Settings