Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g039690.1 Solanum lycopersicum HOM05D000001 ORTHO05D392318 7.9e-79 297.0 143 100.0
Solyc03g119950.1 Solanum lycopersicum HOM05D000001 ORTHO05D009667 1.9e-24 116.3 177 42.4
Sopen03g038830 Solanum pennellii HOM05D000001 ORTHO05D009667 1.9e-24 116.3 177 42.4
PGSC0003DMG400005614 Solanum tuberosum HOM05D000001 ORTHO05D009667 2.5e-24 115.9 139 48.9
CAN.G438.95 Capsicum annuum HOM05D000001 ORTHO05D009667 5.6e-24 114.8 139 48.2
Solyc11g044490.1 Solanum lycopersicum HOM05D000001 ORTHO05D010829 5.8e-21 104.8 190 37.9
Nitab4.5_0004817g0030 Nicotiana tabacum HOM05D000001 ORTHO05D009667 1.7e-20 103.2 139 43.9
Eucgr.J03030 Eucalyptus grandis HOM05D000001 ORTHO05D009667 3.0e-17 92.4 135 42.2
DCAR_025464 Daucus carota HOM05D000001 ORTHO05D009667 5.0e-17 91.7 155 39.4
Nn7g36479 Nelumbo nucifera HOM05D000001 ORTHO05D009667 5.0e-17 91.7 145 40.0
Nitab4.5_0000410g0360 Nicotiana tabacum HOM05D000001 ORTHO05D009667 5.0e-17 91.7 125 41.6
TAR371G0935 Trochodendron aralioides HOM05D000001 ORTHO05D009667 6.6e-17 91.3 145 40.7
Psat7g254120 Pisum sativum HOM05D000001 ORTHO05D009667 2.5e-16 89.4 166 37.3
PGR031G1598 Punica granatum HOM05D000001 ORTHO05D009667 4.3e-16 88.6 155 38.7
Lj5C66G14 Lonicera japonica HOM05D000001 ORTHO05D009667 5.6e-16 88.2 143 39.9
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 7.3e-16 87.8 150 37.3
RcHm_v2.0_Chr2g0137061 Rosa chinensis HOM05D000001 ORTHO05D009667 9.5e-16 87.4 143 39.9
Ah.10g031900 Amaranthus hybridus HOM05D000001 ORTHO05D009667 1.2e-15 87.0 143 37.8
Ca_07172_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009667 1.6e-15 86.7 92 51.1
Phvul.010G046200 Phaseolus vulgaris HOM05D000001 ORTHO05D009667 1.6e-15 86.7 155 38.7
VMungo0331G0993 Vigna mungo HOM05D000001 ORTHO05D009667 2.1e-15 86.3 163 38.0
Cpa.g.c32383.2 Carica papaya HOM05D000001 ORTHO05D009667 2.8e-15 85.9 133 42.1
FvH4_6g30690 Fragaria vesca HOM05D000001 ORTHO05D009667 2.8e-15 85.9 163 38.0
FAN09G0501 Fragaria x ananassa HOM05D000001 ORTHO05D009667 2.8e-15 85.9 163 38.0
FAN14G1850 Fragaria x ananassa HOM05D000001 ORTHO05D009667 2.8e-15 85.9 163 38.0
TWI18G0952 Tripterygium wilfordii HOM05D000001 ORTHO05D009667 2.8e-15 85.9 143 37.8
FAN05G3672 Fragaria x ananassa HOM05D000001 ORTHO05D009667 3.6e-15 85.5 163 38.0
Rhsim08G0217800 Rhododendron simsii HOM05D000001 ORTHO05D009667 3.6e-15 85.5 134 38.8
GSVIVG01017209001 Vitis vinifera HOM05D000001 ORTHO05D009667 3.6e-15 85.5 143 39.2
Dinv30552 Davidia involucrata HOM05D000001 ORTHO05D009667 4.7e-15 85.1 91 50.5
MBI01_g15492_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009667 4.7e-15 85.1 135 40.7
Phvul.010G046000 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 4.7e-15 85.1 155 38.1
QL05p026958 Quercus lobata HOM05D000001 ORTHO05D009667 4.7e-15 85.1 155 37.4
Cfa002031 Carpinus fangiana HOM05D000001 ORTHO05D009667 6.2e-15 84.7 91 49.5
CSS0038176 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009667 8.1e-15 84.3 156 37.2
CSS0041312 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009667 8.1e-15 84.3 156 37.2
Lj3g0004519 Lotus japonicus HOM05D000001 ORTHO05D009667 8.1e-15 84.3 83 53.0
Medtr4g011570 Medicago truncatula HOM05D000001 ORTHO05D009667 8.1e-15 84.3 90 48.9
Prupe.3G077400 Prunus persica HOM05D000001 ORTHO05D009667 8.1e-15 84.3 135 40.0
arahy.Tifrunner.gnm1.ann1.LYR444 Arachis hypogaea HOM05D000001 ORTHO05D009667 1.4e-14 83.6 166 35.5
arahy.Tifrunner.gnm1.ann1.PALU6L Arachis hypogaea HOM05D000001 ORTHO05D009667 1.4e-14 83.6 166 35.5
AUR62035891 Chenopodium quinoa HOM05D000001 ORTHO05D009667 1.8e-14 83.2 152 35.5
Migut.B01590 Erythranthe guttata HOM05D000001 ORTHO05D009667 1.8e-14 83.2 166 37.3
Glyma.07G033300 Glycine max HOM05D000001 ORTHO05D009667 1.8e-14 83.2 83 51.8
Lalb_Chr01g0012531 Lupinus albus HOM05D000001 ORTHO05D009667 1.8e-14 83.2 143 37.1
SGA_v2.0_scaffold153G36967 Striga asiatica HOM05D000001 ORTHO05D009667 2.3e-14 82.8 88 51.1
TPR.G38622 Trifolium pratense HOM05D000001 ORTHO05D009667 2.3e-14 82.8 168 34.5
CiPaw.01G242600 Carya illinoinensis HOM05D000001 ORTHO05D009667 3.1e-14 82.4 91 47.3
Aqoxy7G01972 Aquilegia oxysepala HOM05D000001 ORTHO05D009667 5.2e-14 81.6 135 37.8
AUR62035355 Chenopodium quinoa HOM05D000001 ORTHO05D009667 5.2e-14 81.6 152 35.5
Glyma.08G208902 Glycine max HOM05D000001 ORTHO05D010829 5.2e-14 81.6 83 50.6
PSO017G3030 Papaver somniferum HOM05D000001 ORTHO05D009667 5.2e-14 81.6 145 37.2
FAN02G1635 Fragaria x ananassa HOM05D000001 ORTHO05D010829 6.8e-14 81.3 163 36.8
MD17G1201500 Malus domestica HOM05D000001 ORTHO05D009667 6.8e-14 81.3 83 51.8
PSO170G4945 Papaver somniferum HOM05D000001 ORTHO05D009667 6.8e-14 81.3 135 39.3
Thecc.06G077600 Theobroma cacao HOM05D000001 ORTHO05D009667 1.2e-13 80.5 155 36.8
Duzib235G0798 Durio zibethinus HOM05D000001 ORTHO05D009667 1.5e-13 80.1 154 36.4
Ciclev10024866m.g Citrus clementina HOM05D000001 ORTHO05D009667 2.6e-13 79.3 144 36.8
THA.LOC104812484 Tarenaya hassleriana HOM05D000001 ORTHO05D009667 2.6e-13 79.3 94 46.8
EL10Ac4g08780 Beta vulgaris HOM05D000001 ORTHO05D009667 4.4e-13 78.6 142 37.3
QL04p010478 Quercus lobata HOM05D000001 ORTHO05D010829 4.4e-13 78.6 81 50.6
Gohir.A02G124200 Gossypium hirsutum HOM05D000001 ORTHO05D009667 5.8e-13 78.2 135 37.8
Gohir.D03G065000 Gossypium hirsutum HOM05D000001 ORTHO05D009667 5.8e-13 78.2 135 37.8
Gorai.002G057400 Gossypium raimondii HOM05D000001 ORTHO05D009667 5.8e-13 78.2 135 37.8
Atru.chr1.3166 Acer truncatum HOM05D000001 ORTHO05D009667 7.5e-13 77.8 156 34.6
Atru.chr4.1275 Acer truncatum HOM05D000001 ORTHO05D009667 9.9e-13 77.4 143 35.7
Sc11g0004260 Simmondsia chinensis HOM05D000001 ORTHO05D009667 9.9e-13 77.4 165 32.1
Os05g0574800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009667 1.3e-12 77.0 85 45.9
Hund13113 Selenicereus undatus HOM05D000001 ORTHO05D009667 1.7e-12 76.6 103 42.7
vmacro18948 Vaccinium macrocarpon HOM05D000001 ORTHO05D009667 2.2e-12 76.3 134 36.6
Zm00001eb296600 Zea mays HOM05D000001 ORTHO05D009667 2.2e-12 76.3 85 45.9
Sp1g13870 Schrenkiella parvula HOM05D000001 ORTHO05D009667 2.9e-12 75.9 135 37.8
BcaC05g25630 Brassica carinata HOM05D000001 ORTHO05D009667 8.3e-12 74.3 151 35.1
CsaV3_7G032800 Cucumis sativus L. HOM05D000001 ORTHO05D009667 8.3e-12 74.3 134 38.1
Manes.04G119300 Manihot esculenta HOM05D000001 ORTHO05D009667 8.3e-12 74.3 160 35.0
BcaC05g25502 Brassica carinata HOM05D000001 ORTHO05D009667 1.1e-11 73.9 95 45.3
MELO3C023386.2 Cucumis melo HOM05D000001 ORTHO05D009667 1.1e-11 73.9 134 38.1
Aa31LG7G230 Aethionema arabicum HOM05D000001 ORTHO05D009667 1.4e-11 73.6 95 45.3
Cc04_g03770 Coffea canephora HOM05D000001 ORTHO05D009667 1.4e-11 73.6 103 38.8
AT1G15510 Arabidopsis thaliana HOM05D000001 ORTHO05D009667 2.4e-11 72.8 95 45.3
HanXRQChr16g0500581 Helianthus annuus HOM05D000001 ORTHO05D009667 3.2e-11 72.4 82 47.6
AL1G27630 Arabidopsis lyrata HOM05D000001 ORTHO05D009667 4.1e-11 72.0 95 44.2
A06p11570 Brassica napus HOM05D000001 ORTHO05D009667 4.1e-11 72.0 83 47.0
C05p13720 Brassica napus HOM05D000001 ORTHO05D009667 4.1e-11 72.0 83 47.0
BolC5t30110H Brassica oleracea HOM05D000001 ORTHO05D009667 4.1e-11 72.0 83 47.0
BraA06t24335Z Brassica rapa HOM05D000001 ORTHO05D009667 4.1e-11 72.0 83 47.0
CARHR016080 Cardamine hirsuta HOM05D000001 ORTHO05D009667 4.1e-11 72.0 83 47.0
Potri.003G058700 Populus trichocarpa HOM05D000001 ORTHO05D009667 4.1e-11 72.0 160 34.4
Thhalv10006770m.g Eutrema salsugineum HOM05D000001 ORTHO05D009667 5.4e-11 71.6 81 48.1
Sabra03G0033500 Salix brachista HOM05D000001 ORTHO05D009667 1.2e-10 70.5 160 34.4
Carub.0001s1529 Capsella rubella HOM05D000001 ORTHO05D009667 2.7e-10 69.3 81 46.9
Peaxi162Scf00015g00530 Petunia axillaris HOM05D000001 ORTHO05D009667 3.5e-10 68.9 73 53.4
TPR.G17689 Trifolium pratense HOM05D000001 ORTHO05D010829 1.7e-09 66.6 73 47.9
ClCG09G002520 Citrullus lanatus HOM05D000001 ORTHO05D009667 2.3e-09 66.2 74 51.4
HPP92_024602 Vanilla planifolia HOM05D000001 ORTHO05D009667 3.0e-09 65.9 83 47.0
Haze_16488 Corylus avellana HOM05D000001 ORTHO05D009667 3.3e-08 62.4 78 44.9
Lsat_1_v5_gn_4_104040 Lactuca sativa HOM05D000001 ORTHO05D009667 4.3e-08 62.0 51 52.9
ECA233G3974 Erigeron canadensis HOM05D000001 ORTHO05D009667 8.1e-07 57.8 46 54.3


User provided reference genes

Program Settings