Gene: Sopen03g038830

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g038830
  • Transcript Identifier Sopen03g038830.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 73080859-73083489 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g038830.1

Descriptions

  • Description Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis. | EARLY CHLOROPLAST BIOGENESIS2 (ECB2) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009451
ISO
PLAZA Integrative OrthologyRNA modification AT1G15510
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G15510
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT1G15510

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G15510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032867 DYW domain
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.3.3.4.42 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ECB2/VAC1)