Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g039530.2 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.2e-40 169.5 88 100.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 8.5e-15 83.6 51 88.2
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 1.1e-14 83.2 51 86.3
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 5.5e-14 80.9 51 84.3
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 5.5e-14 80.9 51 84.3
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.7e-13 78.6 51 80.4
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 2.7e-13 78.6 51 84.3
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 4.6e-13 77.8 51 76.5
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.4e-12 76.3 51 78.4
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.4e-12 76.3 51 78.4
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.4e-12 76.3 53 73.6
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 5.1e-12 74.3 51 76.5
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 6.7e-12 73.9 51 72.5
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.7e-12 73.9 53 73.6
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-11 73.2 51 76.5
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.1e-11 73.2 51 72.5
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 3.3e-11 71.6 51 76.5
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.3e-11 71.2 51 74.5
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-11 70.5 53 67.9
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-11 70.5 53 67.9
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 7.4e-11 70.5 53 67.9
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.3e-10 69.7 51 70.6
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.7e-10 69.3 53 67.9
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.7e-10 69.3 52 67.3
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-10 69.3 46 76.1
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 2.2e-10 68.9 53 66.0
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 2.2e-10 68.9 53 66.0
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 2.2e-10 68.9 51 70.6
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-10 68.9 52 67.3
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-10 68.9 52 67.3
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 2.2e-10 68.9 51 68.6
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.8e-10 68.6 52 65.4
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.8e-10 68.6 51 66.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-10 68.2 53 67.9
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-10 68.2 53 67.9
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-10 68.2 53 67.9
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-10 68.2 53 67.9
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.8e-10 67.8 53 64.2
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.4e-09 66.2 53 67.9
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.4e-09 66.2 53 69.8
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.4e-09 66.2 53 69.8
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.8e-09 65.9 53 64.2
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 2.4e-09 65.5 53 66.0
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 4.1e-09 64.7 55 65.5
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 4.1e-09 64.7 53 64.2
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 4.1e-09 64.7 53 64.2
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 4.1e-09 64.7 53 64.2
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 9.1e-09 63.5 47 68.1
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 9.1e-09 63.5 47 68.1
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.5e-08 62.8 53 64.2
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-08 62.8 52 65.4
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-08 62.8 52 65.4
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-08 62.8 52 65.4
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.5e-08 62.8 52 65.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.0e-08 62.4 47 66.0
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.0e-08 62.4 50 62.0
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.6e-08 62.0 51 62.7
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 3.4e-08 61.6 51 62.7
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 5.9e-08 60.8 53 64.2
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.3e-07 59.7 50 60.0
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.7e-07 59.3 53 62.3
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 8.5e-07 57.0 53 52.8


User provided reference genes

Program Settings