Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g032140.1 Solanum lycopersicum HOM05D001081 ORTHO05D003320 3.0e-57 224.9 111 100.0
Nitab4.5_0000548g0100 Nicotiana tabacum HOM05D001081 ORTHO05D003320 1.5e-21 106.3 124 49.2
Nitab4.5_0006933g0020 Nicotiana tabacum HOM05D001081 ORTHO05D003320 3.4e-21 105.1 124 49.2
Solyc03g083170.3 Solanum lycopersicum HOM05D001081 ORTHO05D003320 1.5e-16 89.7 233 30.9
Solyc03g071790.1 Solanum lycopersicum HOM05D001081 ORTHO05D003320 9.0e-14 80.5 234 30.8
Sopen03g019410 Solanum pennellii HOM05D001081 ORTHO05D003320 2.0e-13 79.3 54 68.5
Sopen03g022960 Solanum pennellii HOM05D001081 ORTHO05D003320 3.8e-12 75.1 234 26.9
Dinv35338 Davidia involucrata HOM05D001081 ORTHO05D003320 8.5e-12 73.9 54 63.0
Peaxi162Scf00618g00337 Petunia axillaris HOM05D001081 ORTHO05D003320 8.5e-12 73.9 226 26.5
Peaxi162Scf00740g00139 Petunia axillaris HOM05D001081 ORTHO05D003320 1.4e-11 73.2 230 28.3
Solyc03g071800.2 Solanum lycopersicum HOM05D001081 ORTHO05D003320 1.4e-11 73.2 54 66.7
Sopen03g022630 Solanum pennellii HOM05D001081 ORTHO05D003320 1.4e-11 73.2 54 63.0
Sopen03g022940 Solanum pennellii HOM05D001081 ORTHO05D003320 1.4e-11 73.2 54 63.0
Solyc03g083210.3 Solanum lycopersicum HOM05D001081 ORTHO05D003320 1.9e-11 72.8 234 26.9
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.5e-11 72.4 115 37.4
vmacro10123 Vaccinium macrocarpon HOM05D001081 ORTHO05D003320 5.5e-11 71.2 54 61.1
Dinv29277 Davidia involucrata HOM05D001081 ORTHO05D003320 7.2e-11 70.9 54 59.3
PGR044G2718 Punica granatum HOM05D001081 ORTHO05D003320 9.4e-11 70.5 54 55.6
Duzib084G0071 Durio zibethinus HOM05D001081 ORTHO05D003320 1.2e-10 70.1 54 55.6
QL09p008921 Quercus lobata HOM05D001081 ORTHO05D003320 1.2e-10 70.1 56 57.1
Haze_05842 Corylus avellana HOM05D001081 ORTHO05D003320 2.1e-10 69.3 56 57.1
Lj3A904G78 Lonicera japonica HOM05D001081 ORTHO05D003320 2.7e-10 68.9 54 55.6
Nitab4.5_0000015g0280 Nicotiana tabacum HOM05D001081 ORTHO05D003320 2.7e-10 68.9 54 55.6
Atru.chr12.2212 Acer truncatum HOM05D001081 ORTHO05D003320 3.6e-10 68.6 54 59.3
Migut.F01028 Erythranthe guttata HOM05D001081 ORTHO05D003320 3.6e-10 68.6 54 57.4
Solyc06g051990.4 Solanum lycopersicum HOM05D001081 ORTHO05D003320 3.6e-10 68.6 54 57.4
CAN.G481.12 Capsicum annuum HOM05D001081 ORTHO05D003320 4.6e-10 68.2 235 26.8
Nitab4.5_0009932g0030 Nicotiana tabacum HOM05D001081 ORTHO05D003320 4.6e-10 68.2 54 53.7
Psat5g076960 Pisum sativum HOM05D001081 ORTHO05D003320 4.6e-10 68.2 158 27.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.1e-10 67.8 53 56.6
Rhsim09G0205800 Rhododendron simsii HOM05D001081 ORTHO05D003320 6.1e-10 67.8 54 57.4
Sopen06g018050 Solanum pennellii HOM05D001081 ORTHO05D003320 6.1e-10 67.8 54 57.4
CiPaw.06G046100 Carya illinoinensis HOM05D001081 ORTHO05D003320 7.9e-10 67.4 53 56.6
CSS0034499 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D003320 1.0e-09 67.0 54 57.4
Lj6g0010658 Lotus japonicus HOM05D001081 ORTHO05D003320 1.0e-09 67.0 54 53.7
Potri.012G016000 Populus trichocarpa HOM05D001081 ORTHO05D003320 1.0e-09 67.0 54 53.7
Potri.015G012600 Populus trichocarpa HOM05D001081 ORTHO05D003320 1.0e-09 67.0 54 53.7
CAN.G481.9 Capsicum annuum HOM05D001081 ORTHO05D003320 1.4e-09 66.6 231 26.8
FAN03G1268 Fragaria x ananassa HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 55.6
FAN10G0061 Fragaria x ananassa HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 55.6
FAN10G4108 Fragaria x ananassa HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 55.6
Hma1.2p1_0404F.1_g145400 Hydrangea macrophylla HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 55.6
Lj1g0021086 Lotus japonicus HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 53.7
Lj1g0024637 Lotus japonicus HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 55.6
Sed0011102 Sechium edule HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 57.4
TAR375G0704 Trochodendron aralioides HOM05D001081 ORTHO05D003320 1.4e-09 66.6 54 55.6
CSS0050389 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D003320 1.8e-09 66.2 54 57.4
Lalb_Chr11g0066881 Lupinus albus HOM05D001081 ORTHO05D003320 1.8e-09 66.2 54 53.7
Oeu040723.1 Olea europaea HOM05D001081 ORTHO05D003320 1.8e-09 66.2 54 51.9
QL09p008790 Quercus lobata HOM05D001081 ORTHO05D003320 1.8e-09 66.2 56 55.4
Glyma.04G235500 Glycine max HOM05D001081 ORTHO05D003320 2.3e-09 65.9 54 53.7
Medtr3g491560 Medicago truncatula HOM05D001081 ORTHO05D003320 2.3e-09 65.9 54 51.9
Actinidia06147 Actinidia chinensis HOM05D001081 ORTHO05D003320 3.0e-09 65.5 232 25.4
Haze_05841 Corylus avellana HOM05D001081 ORTHO05D003320 3.0e-09 65.5 56 53.6
MELO3C005887.2 Cucumis melo HOM05D001081 ORTHO05D003320 3.0e-09 65.5 54 53.7
CsaV3_5G000480 Cucumis sativus L. HOM05D001081 ORTHO05D003320 3.0e-09 65.5 54 53.7
Duzib068G0185 Durio zibethinus HOM05D001081 ORTHO05D003320 3.0e-09 65.5 54 51.9
Sed0016547 Sechium edule HOM05D001081 ORTHO05D003320 3.0e-09 65.5 54 51.9
GSVIVG01038554001 Vitis vinifera HOM05D001081 ORTHO05D003320 3.0e-09 65.5 54 51.9
FvH4_7g31551 Fragaria vesca HOM05D001081 ORTHO05D003320 5.1e-09 64.7 54 53.7
Psat5g076840 Pisum sativum HOM05D001081 ORTHO05D003320 5.1e-09 64.7 54 51.9
Prupe.2G309700 Prunus persica HOM05D001081 ORTHO05D003320 6.7e-09 64.3 54 51.9
Rhsim03G0209000 Rhododendron simsii HOM05D001081 ORTHO05D003320 6.7e-09 64.3 54 53.7
RcHm_v2.0_Chr1g0380541 Rosa chinensis HOM05D001081 ORTHO05D003320 6.7e-09 64.3 54 51.9
Sopen11g015170 Solanum pennellii HOM05D001081 ORTHO05D003320 6.7e-09 64.3 54 59.3
MSTRG.51 Avicennia marina HOM05D001081 ORTHO05D003320 8.8e-09 63.9 54 51.9
EL10Ac3g05280 Beta vulgaris HOM05D001081 ORTHO05D003320 8.8e-09 63.9 56 50.0
Eucgr.H02781 Eucalyptus grandis HOM05D001081 ORTHO05D003320 8.8e-09 63.9 54 51.9
Lj1g0004421 Lotus japonicus HOM05D001081 ORTHO05D003320 8.8e-09 63.9 54 53.7
Oeu041053.1 Olea europaea HOM05D001081 ORTHO05D003320 8.8e-09 63.9 53 52.8
Phvul.009G052300 Phaseolus vulgaris HOM05D001081 ORTHO05D003320 8.8e-09 63.9 54 53.7
SHI02369 Sapria himalayana HOM05D001081 ORTHO05D003320 8.8e-09 63.9 56 53.6
Cc09_g00180 Coffea canephora HOM05D001081 ORTHO05D003320 1.1e-08 63.5 54 53.7
HanXRQChr08g0225261 Helianthus annuus HOM05D001081 ORTHO05D003320 1.1e-08 63.5 54 53.7
Manes.10G072000 Manihot esculenta HOM05D001081 ORTHO05D003320 1.1e-08 63.5 54 51.9
Manes.17G027400 Manihot esculenta HOM05D001081 ORTHO05D003320 1.1e-08 63.5 54 51.9
HanXRQChr04g0100491 Helianthus annuus HOM05D001081 ORTHO05D003320 1.5e-08 63.2 54 51.9
MD01G1218300 Malus domestica HOM05D001081 ORTHO05D003320 1.5e-08 63.2 54 50.0
arahy.Tifrunner.gnm1.ann1.8V1LLT Arachis hypogaea HOM05D001081 ORTHO05D003320 1.9e-08 62.8 54 51.9
arahy.Tifrunner.gnm1.ann1.SS9NKM Arachis hypogaea HOM05D001081 ORTHO05D003320 1.9e-08 62.8 54 51.9
CSS0030903 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D003320 1.9e-08 62.8 54 55.6
Ciclev10011757m.g Citrus clementina HOM05D001081 ORTHO05D003320 1.9e-08 62.8 54 55.6
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.9e-08 62.8 54 51.9
Aqoxy7G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D003320 2.5e-08 62.4 54 50.0
Eucgr.H00020 Eucalyptus grandis HOM05D001081 ORTHO05D003320 2.5e-08 62.4 54 50.0
Os01g0235200 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D003320 2.5e-08 62.4 54 50.0
Sc25g0000900 Simmondsia chinensis HOM05D001081 ORTHO05D003320 3.3e-08 62.0 54 48.1
VMungo1309G1923 Vigna mungo HOM05D001081 ORTHO05D003320 3.3e-08 62.0 54 48.1
Aqoxy5G02855 Aquilegia oxysepala HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 51.9
MSTRG.8651 Avicennia marina HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 50.0
CiPaw.02G041300 Carya illinoinensis HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 50.0
Ca_16709_v3 Cicer arietinum L. HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 48.1
Gohir.D12G250500 Gossypium hirsutum HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 51.9
Gorai.008G268600 Gossypium raimondii HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 51.9
Nn1g00259 Nelumbo nucifera HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 50.0
Rhsim06G0231600 Rhododendron simsii HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 51.9
Rhsim06G0232000 Rhododendron simsii HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 51.9
SGA_v2.0_scaffold55G19771 Striga asiatica HOM05D001081 ORTHO05D003320 5.7e-08 61.2 54 51.9
Migut.F00210 Erythranthe guttata HOM05D001081 ORTHO05D003320 7.4e-08 60.8 54 46.3
HanXRQChr03g0071171 Helianthus annuus HOM05D001081 ORTHO05D003320 7.4e-08 60.8 54 51.9
Lj1g0014928 Lotus japonicus HOM05D001081 ORTHO05D003320 7.4e-08 60.8 54 50.0
Lalb_Chr08g0240221 Lupinus albus HOM05D001081 ORTHO05D003320 7.4e-08 60.8 56 46.4
TPR.G3709 Trifolium pratense HOM05D001081 ORTHO05D003320 7.4e-08 60.8 54 48.1
TWI14G0383 Tripterygium wilfordii HOM05D001081 ORTHO05D003320 7.4e-08 60.8 54 50.0
CANSAT21G1954 Cannabis sativa HOM05D001081 ORTHO05D003320 9.7e-08 60.5 54 48.1
Gohir.A12G249700 Gossypium hirsutum HOM05D001081 ORTHO05D003320 9.7e-08 60.5 54 50.0
vmacro22637 Vaccinium macrocarpon HOM05D001081 ORTHO05D003320 9.7e-08 60.5 54 51.9
MD07G1288200 Malus domestica HOM05D001081 ORTHO05D003320 1.3e-07 60.1 54 46.3
unitig_747.g21743 Utricularia gibba HOM05D001081 ORTHO05D003320 1.3e-07 60.1 54 44.4
Lsat_1_v5_gn_8_5221 Lactuca sativa HOM05D001081 ORTHO05D003320 2.2e-07 59.3 53 50.9
Solyc03g071820.2 Solanum lycopersicum HOM05D001081 ORTHO05D003320 2.2e-07 59.3 55 52.7
CsaV3_3G019830 Cucumis sativus L. HOM05D001081 ORTHO05D003320 2.8e-07 58.9 54 46.3
DCAR_010599 Daucus carota HOM05D001081 ORTHO05D003320 2.8e-07 58.9 54 46.3
ECA238G1287 Erigeron canadensis HOM05D001081 ORTHO05D003320 2.8e-07 58.9 54 46.3
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 3.7e-07 58.5 54 50.0
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 4.8e-07 58.2 59 42.4
ATR0602G220 Amborella trichopoda HOM05D001081 ORTHO05D003320 6.3e-07 57.8 54 44.4
CDE03G0337 Ceratophyllum demersum HOM05D001081 ORTHO05D003320 1.1e-06 57.0 54 46.3
CsaV3_1G033480 Cucumis sativus L. HOM05D001081 ORTHO05D003320 1.1e-06 57.0 54 44.4
Glyma.06G129200 Glycine max HOM05D001081 ORTHO05D003320 1.1e-06 57.0 54 48.1
ECA233G1076 Erigeron canadensis HOM05D001081 ORTHO05D003320 1.4e-06 56.6 54 46.3
SalBow2G1109 Salvia bowleyana HOM05D001081 ORTHO05D003320 1.4e-06 56.6 51 49.0
Thecc.03G199400 Theobroma cacao HOM05D001081 ORTHO05D003320 1.4e-06 56.6 54 44.4
Zm00001eb119030 Zea mays HOM05D001081 ORTHO05D003320 1.8e-06 56.2 54 42.6
Zm00001eb182960 Zea mays HOM05D001081 ORTHO05D003320 1.8e-06 56.2 143 24.5
Zm00001eb217050 Zea mays HOM05D001081 ORTHO05D003320 1.8e-06 56.2 54 42.6
Lj1g0018421 Lotus japonicus HOM05D001081 ORTHO05D003320 2.4e-06 55.8 54 42.6
Potri.002G172000 Populus trichocarpa HOM05D001081 ORTHO05D003320 2.4e-06 55.8 54 46.3
Sabra12G0016100 Salix brachista HOM05D001081 ORTHO05D003320 2.4e-06 55.8 48 52.1
MBI07_g37059_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D003320 3.1e-06 55.5 49 46.9
THA.LOC104798900 Tarenaya hassleriana HOM05D001081 ORTHO05D003320 3.1e-06 55.5 54 46.3
TWI23G0785 Tripterygium wilfordii HOM05D001081 ORTHO05D003320 3.1e-06 55.5 54 48.1
Haze_15669 Corylus avellana HOM05D001081 ORTHO05D003320 4.1e-06 55.1 56 44.6
Manes.01G245700 Manihot esculenta HOM05D001081 ORTHO05D003320 4.1e-06 55.1 54 46.3
Medtr7g117665 Medicago truncatula HOM05D001081 ORTHO05D003320 4.1e-06 55.1 54 40.7
CARHR158090 Cardamine hirsuta HOM05D001081 ORTHO05D003320 5.3e-06 54.7 54 44.4
MELO3C008498.2 Cucumis melo HOM05D001081 ORTHO05D003320 5.3e-06 54.7 54 44.4
Sed0025154 Sechium edule HOM05D001081 ORTHO05D003320 6.9e-06 54.3 53 45.3


User provided reference genes

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