Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 6.7e-93 344.0 170 100.0
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 6.5e-64 247.7 149 84.6
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 5.5e-63 244.6 149 83.9
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 5.5e-63 244.6 149 83.9
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 4.7e-62 241.5 149 82.6
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-60 236.9 149 82.6
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.8e-59 232.3 165 72.7
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 5.9e-57 224.6 152 77.0
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 1.6e-54 216.5 149 75.8
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.6e-54 216.5 149 75.8
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 3.6e-54 215.3 149 75.2
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 6.1e-54 214.5 149 74.5
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 8.0e-54 214.2 149 75.2
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 8.0e-54 214.2 149 75.2
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 3.0e-53 212.2 149 74.5
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 1.2e-52 210.3 149 74.5
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.4e-52 208.8 152 73.7
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 1.7e-51 206.5 149 72.5
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 6.4e-51 204.5 156 72.4
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-50 203.8 132 79.5
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 1.4e-50 203.4 149 69.8
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 1.4e-50 203.4 147 69.4
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 1.4e-50 203.4 147 69.4
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 1.4e-50 203.4 147 69.4
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 1.4e-50 203.4 147 69.4
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-49 200.3 134 77.6
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 1.1e-47 193.7 147 68.7
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 1.1e-47 193.7 147 68.7
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 3.3e-47 192.2 150 70.0
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 3.3e-47 192.2 150 70.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 1.6e-46 189.9 150 69.3
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 1.6e-46 189.9 150 69.3
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 1.6e-46 189.9 150 69.3
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 1.6e-46 189.9 150 69.3
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 1.6e-46 189.9 150 69.3
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 4.7e-46 188.3 150 68.7
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 6.8e-45 184.5 149 64.4
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 9.8e-44 180.6 136 66.9
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 7.8e-41 171.0 121 71.9
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.8e-36 154.8 114 70.2
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 7.5e-36 154.5 91 82.4
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 3.0e-32 142.5 91 76.9
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 1.1e-31 140.6 117 65.8
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 5.6e-31 138.3 89 71.9
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.2e-30 137.1 91 72.5
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.2e-30 137.1 91 72.5
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 6.8e-29 131.3 91 69.2
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 4.9e-27 125.2 73 83.6
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 9.2e-26 120.9 147 47.6
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 2.7e-25 119.4 147 46.9
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.0e-24 115.9 91 67.0
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 8.6e-24 114.4 112 60.7
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.5e-23 113.6 74 73.0
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 5.6e-23 111.7 74 73.0
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.2e-22 110.5 89 64.0
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.8e-21 106.7 91 61.5
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 2.6e-20 102.8 79 70.9
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 5.8e-20 101.7 89 57.3
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.9e-20 100.9 62 80.6
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 1.3e-16 90.5 88 53.4
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 6.6e-16 88.2 84 53.6
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 8.1e-14 81.3 108 48.1
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 2.0e-12 76.6 53 67.9
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-11 73.2 62 59.7
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 1.6e-09 67.0 82 51.2
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 6.0e-09 65.1 43 72.1
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 6.0e-09 65.1 40 72.5
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 5.1e-08 62.0 49 63.3
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.5e-07 60.5 40 67.5
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 5.6e-07 58.5 40 72.5
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.6e-07 58.5 51 62.7
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 4.8e-06 55.5 37 67.6


User provided reference genes

Program Settings