Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g028070.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 8.8e-51 203.4 106 100.0
Sopen11g012530 Solanum pennellii HOM05D009059 ORTHO05D011207 9.8e-50 199.9 106 98.1
Solyc11g028040.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.5e-45 186.0 106 91.5
Solyc07g006380.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.6e-36 154.8 106 76.4
Sopen07g002470 Solanum pennellii HOM05D009059 ORTHO05D011207 2.6e-34 148.7 106 73.6
Solyc07g150108.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.7e-33 146.0 84 85.7
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 5.4e-32 141.0 103 69.9
Solyc07g016095.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 7.0e-32 140.6 84 81.0
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 8.0e-28 127.1 96 65.6
CAN.G1610.5 Capsicum annuum HOM05D009059 ORTHO05D011207 5.8e-26 120.9 103 61.2
CAN.G584.64 Capsicum annuum HOM05D009059 ORTHO05D011207 1.7e-25 119.4 104 60.6
Nitab4.5_0005347g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.7e-25 119.4 106 61.3
CAN.G534.6 Capsicum annuum HOM05D009059 ORTHO05D011207 3.7e-25 118.2 105 61.9
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.4e-24 115.5 106 60.4
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.4e-24 115.5 106 60.4
CAN.G584.65 Capsicum annuum HOM05D009059 ORTHO05D011207 3.2e-24 115.2 103 59.2
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.2e-23 113.2 104 58.7
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.5e-23 111.7 106 57.5
CAN.G584.67 Capsicum annuum HOM05D009059 ORTHO05D011207 3.0e-22 108.6 103 55.3
CAN.G1084.27 Capsicum annuum HOM05D009059 ORTHO05D011207 3.9e-22 108.2 103 54.4
Nitab4.5_0003165g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.9e-22 108.2 106 58.5
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.6e-20 101.7 106 53.8
CAN.G1610.6 Capsicum annuum HOM05D009059 ORTHO05D011207 4.7e-20 101.3 81 60.5
CAN.G3387.1 Capsicum annuum HOM05D009059 ORTHO05D011207 1.1e-19 100.1 82 58.5
Solyc11g028060.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.3e-19 99.0 56 89.3
CAN.G1084.28 Capsicum annuum HOM05D009059 ORTHO05D011207 4.4e-18 94.7 85 54.1
Solyc07g016120.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.3e-17 93.2 59 78.0
Sopen07g005870 Solanum pennellii HOM05D000082 ORTHO05D000038 3.7e-17 91.7 55 85.5
Solyc07g016113.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.4e-16 89.0 109 53.2
CAN.G1084.24 Capsicum annuum HOM05D009059 ORTHO05D011207 7.1e-16 87.4 107 47.7
CAN.G5797.1 Capsicum annuum HOM05D009059 ORTHO05D011207 1.0e-14 83.6 49 75.5
Peaxi162Scf00297g00815 Petunia axillaris HOM05D009059 ORTHO05D011207 1.3e-14 83.2 105 44.8
Peaxi162Scf00297g00816 Petunia axillaris HOM05D009059 ORTHO05D011207 3.0e-14 82.0 104 40.4
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.1e-14 81.3 83 53.0
Peaxi162Scf00005g00041 Petunia axillaris HOM05D009059 ORTHO05D011207 4.3e-13 78.2 105 41.9
CAN.G1084.29 Capsicum annuum HOM05D009059 ORTHO05D011207 3.6e-12 75.1 62 56.5
Peaxi162Scf00005g00035 Petunia axillaris HOM05D009059 ORTHO05D011207 4.0e-11 71.6 105 39.0
Os02g0172000 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 4.4e-10 68.2 51 52.9
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 8.4e-09 63.9 77 39.0
Phvul.003G282500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 8.4e-09 63.9 78 39.7
Glyma.16G100400 Glycine max HOM05D001231 ORTHO05D001012 1.1e-08 63.5 79 39.2
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.1e-08 63.5 64 40.6
SGA_v2.0_scaffold23G10223 Striga asiatica HOM05D001231 ORTHO05D001012 1.1e-08 63.5 68 47.1
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.4e-08 63.2 71 40.8
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.9e-08 62.8 78 39.7
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 1.9e-08 62.8 77 42.9
CAN.G458.12 Capsicum annuum HOM05D001231 ORTHO05D001012 2.4e-08 62.4 66 43.9
Carub.0008s2442 Capsella rubella HOM05D001231 ORTHO05D001012 4.1e-08 61.6 68 41.2
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 4.1e-08 61.6 45 53.3
Medtr3g032570 Medicago truncatula HOM05D001231 ORTHO05D001012 4.1e-08 61.6 80 40.0
Psat4g112000 Pisum sativum HOM05D001231 ORTHO05D001012 4.1e-08 61.6 76 42.1
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 4.1e-08 61.6 76 42.1
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 5.4e-08 61.2 67 41.8
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 7.1e-08 60.8 78 38.5
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 7.1e-08 60.8 47 48.9
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 7.1e-08 60.8 68 42.6
MELO3C005214.2 Cucumis melo HOM05D001231 ORTHO05D001012 9.2e-08 60.5 52 50.0
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 9.2e-08 60.5 71 42.3
CAN.G976.4 Capsicum annuum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 80 40.0
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 1.2e-07 60.1 71 39.4
Lalb_Chr16g0392501 Lupinus albus HOM05D001231 ORTHO05D001012 1.2e-07 60.1 52 51.9
MD13G1011600 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-07 60.1 54 40.7
Solyc07g007755.1 Solanum lycopersicum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 78 39.7
PGSC0003DMG400015133 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.2e-07 60.1 45 53.3
PGSC0003DMG400029484 Solanum tuberosum HOM05D001231 ORTHO05D001012 2.1e-07 59.3 66 40.9
Glyma.08G268000 Glycine max HOM05D001231 ORTHO05D001012 3.5e-07 58.5 76 38.2
Lj4g0025743 Lotus japonicus HOM05D001231 ORTHO05D001012 3.5e-07 58.5 78 38.5
MD11G1113600 Malus domestica HOM05D001231 ORTHO05D001012 3.5e-07 58.5 54 44.4
AT2G31957 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 4.6e-07 58.2 51 45.1
Migut.J01199 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.6e-07 58.2 73 39.7
MD02G1207600 Malus domestica HOM05D001231 ORTHO05D001012 4.6e-07 58.2 54 46.3
Medtr8g070770 Medicago truncatula HOM05D001231 ORTHO05D001012 4.6e-07 58.2 76 39.5
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 4.6e-07 58.2 73 39.7
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 4.6e-07 58.2 64 43.8
Sopen07g001020 Solanum pennellii HOM05D001231 ORTHO05D001012 4.6e-07 58.2 78 38.5
CAN.G976.2 Capsicum annuum HOM05D001231 ORTHO05D001012 6.0e-07 57.8 78 35.9
Migut.M01516 Erythranthe guttata HOM05D001231 ORTHO05D001012 6.0e-07 57.8 71 39.4
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 6.0e-07 57.8 67 43.3
MD11G1108800 Malus domestica HOM05D001231 ORTHO05D001012 6.0e-07 57.8 54 44.4
MD14G1073000 Malus domestica HOM05D001231 ORTHO05D001012 6.0e-07 57.8 54 46.3
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 6.0e-07 57.8 80 38.8
PSO675G5343 Papaver somniferum HOM05D001231 ORTHO05D001012 6.0e-07 57.8 75 40.0
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 6.0e-07 57.8 80 38.8
Prupe.1G341700 Prunus persica HOM05D001231 ORTHO05D001012 6.0e-07 57.8 79 38.0
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 7.8e-07 57.4 54 46.3
Nitab4.5_0000374g0050 Nicotiana tabacum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 78 38.5
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 7.8e-07 57.4 67 41.8
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 78 42.3
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 79 40.5
Cc06_g07880 Coffea canephora HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 41.0
Nitab4.5_0009181g0010 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 37.2
SalBow6G2289 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.0e-06 57.0 66 39.4
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 1.3e-06 56.6 78 38.5
PGSC0003DMG400015130 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.3e-06 56.6 78 37.2
EL10Ac5g10882 Beta vulgaris HOM05D001231 ORTHO05D001012 1.7e-06 56.2 70 40.0
CANSAT54G0755 Cannabis sativa HOM05D001231 ORTHO05D001012 1.7e-06 56.2 63 42.9
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 1.7e-06 56.2 69 37.7
Ca_17033_v3 Cicer arietinum L. HOM05D001231 ORTHO05D001012 1.7e-06 56.2 70 38.6
FvH4_4g36102 Fragaria vesca HOM05D001231 ORTHO05D001012 1.7e-06 56.2 71 42.3
FAN07G0709 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.7e-06 56.2 71 42.3
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 1.7e-06 56.2 65 40.0
PSO541G0572 Papaver somniferum HOM05D001231 ORTHO05D001012 1.7e-06 56.2 61 41.0
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.7e-06 56.2 68 41.2
CAN.G976.3 Capsicum annuum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 73 37.0
FAN22G0227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.3e-06 55.8 71 42.3
Gohir.D01G023523 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 62 40.3
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 2.3e-06 55.8 77 37.7
Medtr8g075980 Medicago truncatula HOM05D001231 ORTHO05D001012 2.3e-06 55.8 68 39.7
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.3e-06 55.8 66 36.4
SEGI_34828 Sequoiadendron giganteum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 77 42.9
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 2.3e-06 55.8 78 38.5
FvH4_4g36104 Fragaria vesca HOM05D001231 ORTHO05D001012 3.0e-06 55.5 71 40.8
Gohir.D01G023526 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.0e-06 55.5 74 40.5
Gorai.002G029700 Gossypium raimondii HOM05D001231 ORTHO05D001012 3.0e-06 55.5 74 40.5
Os02g0172300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 3.0e-06 55.5 66 39.4
Os04g0189400 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 3.0e-06 55.5 45 46.7
BolC2t12358H Brassica oleracea HOM05D001231 ORTHO05D001012 3.9e-06 55.1 63 42.9
Lj4g0007075 Lotus japonicus HOM05D001231 ORTHO05D001012 3.9e-06 55.1 71 33.8
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 3.9e-06 55.1 70 42.9
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 3.9e-06 55.1 65 40.0
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 3.9e-06 55.1 79 38.0
Prupe.1G341600 Prunus persica HOM05D001231 ORTHO05D001012 3.9e-06 55.1 87 35.6
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 3.9e-06 55.1 76 35.5
Solyc04g008470.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.9e-06 55.1 66 36.4
Sopen07g003700 Solanum pennellii HOM05D001231 ORTHO05D001012 3.9e-06 55.1 69 37.7
A02p42920 Brassica napus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 67 41.8
C02p62860 Brassica napus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 67 41.8
Ciclev10005867m.g Citrus clementina HOM05D001231 ORTHO05D001012 5.1e-06 54.7 63 38.1
Gorai.002G029500 Gossypium raimondii HOM05D001231 ORTHO05D001012 5.1e-06 54.7 74 40.5
Lalb_Chr11g0068851 Lupinus albus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 72 36.1
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 5.1e-06 54.7 69 34.8
Hund02690 Selenicereus undatus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 70 35.7
FAN12G0873 Fragaria x ananassa HOM05D001184 ORTHO05D003397 6.6e-06 54.3 98 34.7
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 6.6e-06 54.3 76 39.5
Gohir.A01G033800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 47 48.9
MD11G1108400 Malus domestica HOM05D001231 ORTHO05D001012 6.6e-06 54.3 87 33.3
Peaxi162Scf00072g01012 Petunia axillaris HOM05D001231 ORTHO05D001012 6.6e-06 54.3 67 37.3
VMungo1309G2262 Vigna mungo HOM05D001231 ORTHO05D001012 6.6e-06 54.3 65 40.0
CANSAT78G1068 Cannabis sativa HOM05D001231 ORTHO05D001012 8.6e-06 53.9 64 35.9
Carub.0005s0116 Capsella rubella HOM05D001231 ORTHO05D001012 8.6e-06 53.9 78 35.9
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.9 47 44.7
Lj1g0011574 Lotus japonicus HOM05D001231 ORTHO05D001012 8.6e-06 53.9 72 36.1
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 8.6e-06 53.9 45 51.1
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 8.6e-06 53.9 71 36.6
Solyc07g007710.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 8.6e-06 53.9 69 37.7
Sopen07g001030 Solanum pennellii HOM05D001231 ORTHO05D001012 8.6e-06 53.9 76 36.8


User provided reference genes

Program Settings