Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g027820.1 Solanum lycopersicum HOM05D002874 ORTHO05D003250 2.8e-21 104.0 41 100.0
PGSC0003DMG400026730 Solanum tuberosum HOM05D002874 ORTHO05D003250 3.3e-14 80.5 39 79.5
Migut.C01326 Erythranthe guttata HOM05D002874 ORTHO05D003250 5.7e-14 79.7 39 76.9
CAN.G2.32 Capsicum annuum HOM05D002874 ORTHO05D003250 3.7e-13 77.0 39 74.4
Atru.chr13.2374 Acer truncatum HOM05D002874 ORTHO05D003250 6.3e-13 76.3 40 72.5
CANSAT56G0379 Cannabis sativa HOM05D002874 ORTHO05D003250 1.8e-12 74.7 35 77.1
CANSAT56G0446 Cannabis sativa HOM05D002874 ORTHO05D003250 1.8e-12 74.7 35 77.1
Eucgr.F04113 Eucalyptus grandis HOM05D002874 ORTHO05D003250 1.8e-12 74.7 39 74.4
Eucgr.L03665 Eucalyptus grandis HOM05D002874 ORTHO05D003250 1.8e-12 74.7 39 74.4
Nitab4.5_0001463g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.8e-12 74.7 39 71.8
Peaxi162Scf00688g00428 Petunia axillaris HOM05D002874 ORTHO05D003250 1.8e-12 74.7 39 71.8
MELO3C025008.2 Cucumis melo HOM05D002874 ORTHO05D003250 2.4e-12 74.3 39 71.8
FAN08G3034 Fragaria x ananassa HOM05D002874 ORTHO05D003250 2.4e-12 74.3 35 80.0
Cfa012972 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.1e-12 73.9 39 71.8
Haze_21316 Corylus avellana HOM05D002874 ORTHO05D003250 3.1e-12 73.9 39 71.8
CsaV3_6G002730 Cucumis sativus L. HOM05D002874 ORTHO05D003250 3.1e-12 73.9 39 71.8
Gohir.A05G251600 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.1e-12 73.6 40 72.5
Gohir.D05G252200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.1e-12 73.6 40 72.5
Gorai.009G265000 Gossypium raimondii HOM05D002874 ORTHO05D003250 4.1e-12 73.6 40 72.5
PSO170G2830 Papaver somniferum HOM05D002874 ORTHO05D003250 4.1e-12 73.6 40 70.0
PSO782G4577 Papaver somniferum HOM05D002874 ORTHO05D003250 4.1e-12 73.6 40 70.0
ClCG08G002490 Citrullus lanatus HOM05D002874 ORTHO05D003250 5.3e-12 73.2 39 71.8
FvH4_5g31590 Fragaria vesca HOM05D002874 ORTHO05D003250 5.3e-12 73.2 39 71.8
RcHm_v2.0_Chr7g0227111 Rosa chinensis HOM05D002874 ORTHO05D003250 5.3e-12 73.2 39 69.2
MSTRG.1570 Avicennia marina HOM05D002874 ORTHO05D003250 7.0e-12 72.8 39 71.8
EL10Ac1g00137 Beta vulgaris HOM05D002874 ORTHO05D003250 7.0e-12 72.8 38 73.7
Duzib211G0598 Durio zibethinus HOM05D002874 ORTHO05D003250 7.0e-12 72.8 35 80.0
Thecc.08G192600 Theobroma cacao HOM05D002874 ORTHO05D003250 7.0e-12 72.8 35 80.0
MSTRG.25476 Avicennia marina HOM05D002874 ORTHO05D003250 9.1e-12 72.4 39 69.2
Ciclev10002598m.g Citrus clementina HOM05D002874 ORTHO05D003250 9.1e-12 72.4 39 71.8
Duzib116G0473 Durio zibethinus HOM05D002874 ORTHO05D003250 9.1e-12 72.4 35 80.0
Nitab4.5_0005616g0060 Nicotiana tabacum HOM05D002874 ORTHO05D003250 9.1e-12 72.4 39 69.2
THA.LOC104800136 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 1.2e-11 72.0 35 80.0
THA.LOC104809729 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 1.2e-11 72.0 35 80.0
CSS0018795 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 2.6e-11 70.9 32 81.2
CSS0020391 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 2.6e-11 70.9 32 81.2
Manes.18G106200 Manihot esculenta HOM05D002874 ORTHO05D003250 3.5e-11 70.5 35 77.1
Manes.18G106700 Manihot esculenta HOM05D002874 ORTHO05D003250 3.5e-11 70.5 35 77.1
Nn1g08358 Nelumbo nucifera HOM05D002874 ORTHO05D003250 3.5e-11 70.5 40 67.5
MD08G1217700 Malus domestica HOM05D002874 ORTHO05D003250 4.5e-11 70.1 39 66.7
Potri.019G078800 Populus trichocarpa HOM05D002874 ORTHO05D003250 4.5e-11 70.1 35 77.1
Sabra13G0091100 Salix brachista HOM05D002874 ORTHO05D003250 4.5e-11 70.1 35 77.1
HPP92_003141 Vanilla planifolia HOM05D002874 ORTHO05D003250 4.5e-11 70.1 37 70.3
Lalb_Chr15g0080121 Lupinus albus HOM05D002874 ORTHO05D003250 5.9e-11 69.7 37 70.3
BcaC08g46664 Brassica carinata HOM05D002874 ORTHO05D003250 7.7e-11 69.3 35 74.3
A07p38290 Brassica napus HOM05D002874 ORTHO05D003250 7.7e-11 69.3 35 74.3
C06p46350 Brassica napus HOM05D002874 ORTHO05D003250 7.7e-11 69.3 35 74.3
BraA07t31393Z Brassica rapa HOM05D002874 ORTHO05D003250 7.7e-11 69.3 35 74.3
Glyma.04G255000 Glycine max HOM05D002874 ORTHO05D003250 7.7e-11 69.3 38 65.8
Sabra19G0089700 Salix brachista HOM05D002874 ORTHO05D003250 7.7e-11 69.3 36 72.2
Potri.013G105400 Populus trichocarpa HOM05D002874 ORTHO05D003250 1.0e-10 68.9 35 74.3
Sc01g0002000 Simmondsia chinensis HOM05D002874 ORTHO05D003250 1.0e-10 68.9 31 80.6
BcaC06g34971 Brassica carinata HOM05D002874 ORTHO05D003250 1.3e-10 68.6 35 74.3
BolC6t39680H Brassica oleracea HOM05D002874 ORTHO05D003250 1.3e-10 68.6 31 80.6
BolC7t42639H Brassica oleracea HOM05D002874 ORTHO05D003250 1.3e-10 68.6 35 74.3
MD15G1405300 Malus domestica HOM05D002874 ORTHO05D003250 1.3e-10 68.6 35 71.4
TAR628G0883 Trochodendron aralioides HOM05D002874 ORTHO05D003250 1.3e-10 68.6 37 67.6
MBI17_g21478_MAGBIO Magnolia biondii HOM05D002874 ORTHO05D003250 1.7e-10 68.2 37 67.6
Carub.0001s2204 Capsella rubella HOM05D002874 ORTHO05D003250 2.2e-10 67.8 35 74.3
HanXRQChr04g0101991 Helianthus annuus HOM05D002874 ORTHO05D003250 2.2e-10 67.8 32 78.1
BcaB03g14199 Brassica carinata HOM05D002874 ORTHO05D003250 2.9e-10 67.4 37 73.0
GSVIVG01026089001 Vitis vinifera HOM05D002874 ORTHO05D003250 2.9e-10 67.4 31 77.4
AT1G72175 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 3.8e-10 67.0 35 71.4
Carub.0002s1898 Capsella rubella HOM05D002874 ORTHO05D003250 3.8e-10 67.0 35 71.4
Pp3c4_27320 Physcomitrium patens HOM05D002874 ORTHO05D003250 5.0e-10 66.6 40 60.0
BcaB05g24721 Brassica carinata HOM05D002874 ORTHO05D003250 6.5e-10 66.2 35 71.4
BcaC08g45227 Brassica carinata HOM05D002874 ORTHO05D003250 6.5e-10 66.2 35 71.4
BcaC08g45229 Brassica carinata HOM05D002874 ORTHO05D003250 6.5e-10 66.2 35 71.4
Cc10_g09520 Coffea canephora HOM05D002874 ORTHO05D003250 6.5e-10 66.2 30 83.3
Thhalv10019196m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 6.5e-10 66.2 35 71.4
Sp5g27260 Schrenkiella parvula HOM05D002874 ORTHO05D003250 6.5e-10 66.2 35 71.4
vmacro00978 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 6.5e-10 66.2 32 78.1
Aqoxy6G00106 Aquilegia oxysepala HOM05D002874 ORTHO05D003250 8.5e-10 65.9 32 71.9
BcaB02g07327 Brassica carinata HOM05D002874 ORTHO05D003250 8.5e-10 65.9 35 74.3
Lj3g0022874 Lotus japonicus HOM05D002874 ORTHO05D003250 8.5e-10 65.9 34 67.6
Oeu059197.1 Olea europaea HOM05D002874 ORTHO05D003250 8.5e-10 65.9 32 75.0
Aa31LG4G8390 Aethionema arabicum HOM05D002874 ORTHO05D003250 1.1e-09 65.5 35 71.4
A07p14340 Brassica napus HOM05D002874 ORTHO05D003250 1.1e-09 65.5 35 71.4
C07p21110 Brassica napus HOM05D002874 ORTHO05D003250 1.1e-09 65.5 35 71.4
CARHR022860 Cardamine hirsuta HOM05D002874 ORTHO05D003250 1.1e-09 65.5 35 71.4
Hma1.2p1_0004F.1_g004110 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 1.1e-09 65.5 36 66.7
Medtr3g005800 Medicago truncatula HOM05D002874 ORTHO05D003250 1.1e-09 65.5 31 74.2
SEGI_08350 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 1.1e-09 65.5 31 74.2
SEGI_23344 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 1.1e-09 65.5 31 74.2
TWI59G0939 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 1.1e-09 65.5 32 75.0
VMungo1080G0651 Vigna mungo HOM05D002874 ORTHO05D003250 1.1e-09 65.5 38 63.2
TPR.G25522 Trifolium pratense HOM05D002874 ORTHO05D003250 1.5e-09 65.1 36 69.4
Ah.05g178590 Amaranthus hybridus HOM05D002874 ORTHO05D003250 1.9e-09 64.7 30 76.7
HanXRQChr02g0036891 Helianthus annuus HOM05D002874 ORTHO05D003250 1.9e-09 64.7 32 75.0
Phvul.005G001800 Phaseolus vulgaris HOM05D002874 ORTHO05D003250 2.5e-09 64.3 37 62.2
arahy.Tifrunner.gnm1.ann1.3TL6MN Arachis hypogaea HOM05D002874 ORTHO05D003250 4.2e-09 63.5 33 66.7
arahy.Tifrunner.gnm1.ann1.ULYQ5U Arachis hypogaea HOM05D002874 ORTHO05D003250 4.2e-09 63.5 33 66.7
Thhalv10008870m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 4.2e-09 63.5 35 71.4
SHI08997 Sapria himalayana HOM05D002874 ORTHO05D003250 4.2e-09 63.5 37 70.3
BcaB03g14961 Brassica carinata HOM05D002874 ORTHO05D003250 5.5e-09 63.2 35 68.6
CiPaw.08G003100 Carya illinoinensis HOM05D002874 ORTHO05D003250 5.5e-09 63.2 30 73.3
Os03g0839000 Oryza sativa ssp. japonica HOM05D002874 ORTHO05D003250 5.5e-09 63.2 28 78.6
Psat1g008160 Pisum sativum HOM05D002874 ORTHO05D003250 5.5e-09 63.2 29 75.9
SMO347G0660 Selaginella moellendorffii HOM05D002874 ORTHO05D003250 5.5e-09 63.2 40 57.5
Rhsim12G0006100 Rhododendron simsii HOM05D002874 ORTHO05D003250 7.2e-09 62.8 28 82.1
CARHR065030 Cardamine hirsuta HOM05D002874 ORTHO05D003250 1.2e-08 62.0 35 68.6
Lsat_1_v5_gn_1_25761 Lactuca sativa HOM05D002874 ORTHO05D003250 1.6e-08 61.6 30 73.3
ECA247G4052 Erigeron canadensis HOM05D002874 ORTHO05D003250 2.1e-08 61.2 32 68.8
Oeu006595.1 Olea europaea HOM05D002874 ORTHO05D003250 2.1e-08 61.2 32 68.8
AagrBONN_evm.TU.Sc2ySwM_362.905 Anthoceros agrestis HOM05D002874 ORTHO05D003250 3.6e-08 60.5 31 71.0
CiPaw.07G235400 Carya illinoinensis HOM05D002874 ORTHO05D003250 3.6e-08 60.5 35 62.9
ATR0709G075 Amborella trichopoda HOM05D002874 ORTHO05D003250 1.4e-07 58.5 28 67.9
Sabra04G0095400 Salix brachista HOM05D002874 ORTHO05D003250 1.4e-07 58.5 31 64.5
Gohir.A01G006100 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.8e-07 58.2 29 65.5
Gohir.D01G006200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.8e-07 58.2 29 65.5
Gorai.002G007200 Gossypium raimondii HOM05D002874 ORTHO05D003250 1.8e-07 58.2 29 65.5
Manes.15G142950 Manihot esculenta HOM05D002874 ORTHO05D003250 1.8e-07 58.2 30 70.0
Carub.0007s0648 Capsella rubella HOM05D002874 ORTHO05D003250 2.3e-07 57.8 29 69.0
Medtr3g005790 Medicago truncatula HOM05D002874 ORTHO05D003250 2.3e-07 57.8 31 67.7
Potri.004G143900 Populus trichocarpa HOM05D002874 ORTHO05D003250 2.3e-07 57.8 31 64.5
Rhsim05G0106200 Rhododendron simsii HOM05D002874 ORTHO05D003250 2.3e-07 57.8 35 54.3
AT4G33940 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 3.0e-07 57.4 31 61.3
AUR62004599 Chenopodium quinoa HOM05D002874 ORTHO05D003250 4.0e-07 57.0 27 74.1
Mapoly0062s0090 Marchantia polymorpha HOM05D002874 ORTHO05D003250 4.0e-07 57.0 40 52.5
AL7G17480 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 5.2e-07 56.6 29 65.5
SGA_v2.0_scaffold110G31336 Striga asiatica HOM05D002874 ORTHO05D003250 5.2e-07 56.6 31 64.5
Eucgr.I01172 Eucalyptus grandis HOM05D002874 ORTHO05D003250 6.7e-07 56.2 36 55.6
Oeu032245.1 Olea europaea HOM05D002874 ORTHO05D003250 6.7e-07 56.2 31 64.5
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 8.8e-07 55.8 31 58.1
THA.LOC104807351 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 8.8e-07 55.8 29 62.1
Ciclev10029827m.g Citrus clementina HOM05D002874 ORTHO05D003250 1.1e-06 55.5 31 58.1
Cc02_g22750 Coffea canephora HOM05D002874 ORTHO05D003250 1.1e-06 55.5 30 63.3
DCAR_006694 Daucus carota HOM05D002874 ORTHO05D003250 1.1e-06 55.5 34 61.8
Nitab4.5_0001744g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.1e-06 55.5 34 55.9
PGR142G2581 Punica granatum HOM05D002874 ORTHO05D003250 1.1e-06 55.5 31 58.1
Gohir.A13G038000 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.5e-06 55.1 29 62.1
Gohir.D13G036400 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.5e-06 55.1 29 62.1
Gorai.013G041100 Gossypium raimondii HOM05D002874 ORTHO05D003250 1.5e-06 55.1 29 62.1
PGSC0003DMG400023801 Solanum tuberosum HOM05D002874 ORTHO05D003250 1.5e-06 55.1 34 55.9
Thecc.02G096400 Theobroma cacao HOM05D002874 ORTHO05D003250 1.5e-06 55.1 29 62.1
CARHR242040 Cardamine hirsuta HOM05D002874 ORTHO05D003250 2.0e-06 54.7 29 62.1
Peaxi162Scf00011g00065 Petunia axillaris HOM05D002874 ORTHO05D003250 2.0e-06 54.7 29 62.1
TWI75G1683 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 2.0e-06 54.7 30 63.3
BcaNung04335 Brassica carinata HOM05D002874 ORTHO05D003250 3.3e-06 53.9 32 56.2
A01p04460 Brassica napus HOM05D002874 ORTHO05D003250 3.3e-06 53.9 29 62.1
C01p04850 Brassica napus HOM05D002874 ORTHO05D003250 3.3e-06 53.9 29 62.1
BolC1t00469H Brassica oleracea HOM05D002874 ORTHO05D003250 3.3e-06 53.9 29 62.1
BraA01t00433Z Brassica rapa HOM05D002874 ORTHO05D003250 3.3e-06 53.9 29 62.1
Cpa.g.sc62.42 Carica papaya HOM05D002874 ORTHO05D003250 3.3e-06 53.9 29 62.1
COL.COLO4_11715 Corchorus olitorius HOM05D002874 ORTHO05D003250 3.3e-06 53.9 29 58.6
Rhsim07G0166200 Rhododendron simsii HOM05D002874 ORTHO05D003250 3.3e-06 53.9 31 54.8
BcaNung02905 Brassica carinata HOM05D002874 ORTHO05D003250 4.4e-06 53.5 29 62.1
A03p62460 Brassica napus HOM05D002874 ORTHO05D003250 4.4e-06 53.5 29 62.1
C07p60060 Brassica napus HOM05D002874 ORTHO05D003250 4.4e-06 53.5 29 62.1
BraA03t15313Z Brassica rapa HOM05D002874 ORTHO05D003250 4.4e-06 53.5 29 62.1
CBR_g38544 Chara braunii HOM05D002874 ORTHO05D003250 4.4e-06 53.5 31 67.7
Thhalv10026077m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 4.4e-06 53.5 29 62.1
Sp7g31670 Schrenkiella parvula HOM05D002874 ORTHO05D003250 4.4e-06 53.5 29 62.1
vmacro19881 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 5.7e-06 53.1 27 63.0
MSTRG.16509 Avicennia marina HOM05D002874 ORTHO05D003250 9.7e-06 52.4 34 52.9


User provided reference genes

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