Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020130.3 Solanum lycopersicum HOM05D028948 ORTHO05D020275 5.7e-65 251.1 164 100.0
PGSC0003DMG400019538 Solanum tuberosum HOM05D013963 ORTHO05D018679 5.8e-17 91.7 99 52.5
PGSC0003DMG400019517 Solanum tuberosum HOM05D013963 ORTHO05D018679 3.8e-16 89.0 106 49.1
CAN.G837.4 Capsicum annuum HOM05D013963 ORTHO05D115759 1.1e-15 87.4 99 47.5
Sopen03g035170 Solanum pennellii HOM05D000242 ORTHO05D020275 1.3e-13 80.5 70 54.3
PGSC0003DMG400002442 Solanum tuberosum HOM05D000242 ORTHO05D020275 1.6e-11 73.6 100 47.0
CAN.G407.127 Capsicum annuum HOM05D028948 ORTHO05D020275 3.6e-11 72.4 108 42.6
CAN.G407.126 Capsicum annuum HOM05D052235 ORTHO05D020275 8.1e-11 71.2 90 47.8
Solyc03g116230.4 Solanum lycopersicum HOM05D013963 ORTHO05D051220 8.1e-11 71.2 100 44.0
CAN.G837.6 Capsicum annuum HOM05D013963 ORTHO05D018679 1.4e-10 70.5 112 33.9
Solyc03g116190.2 Solanum lycopersicum HOM05D013963 ORTHO05D020275 5.2e-10 68.6 97 41.2
Solyc11g020530.3 Solanum lycopersicum HOM05D028948 ORTHO05D001634 5.2e-10 68.6 144 45.1
PGSC0003DMG400019516 Solanum tuberosum HOM05D013963 ORTHO05D018679 1.2e-09 67.4 41 65.9
Phvul.009G116600 Phaseolus vulgaris HOM05D000242 ORTHO05D000700 3.4e-09 65.9 49 57.1
Gohir.A01G172800 Gossypium hirsutum HOM05D000242 ORTHO05D000700 4.4e-09 65.5 44 59.1
Gohir.D01G164000 Gossypium hirsutum HOM05D000242 ORTHO05D000700 4.4e-09 65.5 44 59.1
Gorai.002G203600 Gossypium raimondii HOM05D000242 ORTHO05D000700 4.4e-09 65.5 44 59.1
Solyc11g020450.3 Solanum lycopersicum HOM05D028948 ORTHO05D391886 5.8e-09 65.1 39 74.4
PGSC0003DMG400019539 Solanum tuberosum HOM05D019564 ORTHO05D021185 5.8e-09 65.1 96 41.7
CAN.G407.125 Capsicum annuum HOM05D000017 ORTHO05D000013 7.6e-09 64.7 90 43.3
Nitab4.5_0000009g0510 Nicotiana tabacum HOM05D000242 ORTHO05D000700 1.3e-08 63.9 43 60.5
Gohir.A01G172750 Gossypium hirsutum HOM05D000242 ORTHO05D000700 1.7e-08 63.5 44 56.8
Gohir.D01G163900 Gossypium hirsutum HOM05D000242 ORTHO05D000700 1.7e-08 63.5 44 56.8
Gorai.002G203500 Gossypium raimondii HOM05D000242 ORTHO05D000700 1.7e-08 63.5 44 56.8
Nitab4.5_0001274g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 1.7e-08 63.5 48 54.2
QL11p054881 Quercus lobata HOM05D000242 ORTHO05D000700 1.7e-08 63.5 58 53.4
Phvul.009G116500 Phaseolus vulgaris HOM05D000242 ORTHO05D000700 2.2e-08 63.2 49 55.1
PGSC0003DMG400026855 Solanum tuberosum HOM05D000242 ORTHO05D000700 2.2e-08 63.2 46 56.5
CAN.G837.5 Capsicum annuum HOM05D013963 ORTHO05D018679 2.9e-08 62.8 39 64.1
Hma1.2p1_0032F.1_g018930 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 2.9e-08 62.8 47 53.2
Nitab4.5_0005898g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 2.9e-08 62.8 45 55.6
Nitab4.5_0000842g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 3.8e-08 62.4 39 61.5
Nitab4.5_0004103g0030 Nicotiana tabacum HOM05D000242 ORTHO05D000700 3.8e-08 62.4 39 61.5
Dinv41892 Davidia involucrata HOM05D000242 ORTHO05D000700 4.9e-08 62.0 46 58.7
THA.LOC104816920 Tarenaya hassleriana HOM05D000242 ORTHO05D000700 4.9e-08 62.0 43 58.1
Lj1g0008690 Lotus japonicus HOM05D000242 ORTHO05D000700 6.4e-08 61.6 56 50.0
CANSAT25G0745 Cannabis sativa HOM05D000242 ORTHO05D000700 8.4e-08 61.2 41 56.1
Dinv41891 Davidia involucrata HOM05D000242 ORTHO05D000700 8.4e-08 61.2 46 58.7
Phvul.009G116700 Phaseolus vulgaris HOM05D000242 ORTHO05D000700 8.4e-08 61.2 46 56.5
SMO174G0181 Selaginella moellendorffii HOM05D000242 ORTHO05D000700 1.1e-07 60.8 43 58.1
Solyc10g055800.2 Solanum lycopersicum HOM05D000242 ORTHO05D000700 1.1e-07 60.8 43 58.1
Sopen10g025620 Solanum pennellii HOM05D000242 ORTHO05D000700 1.1e-07 60.8 43 58.1
CANSAT01G3247 Cannabis sativa HOM05D000242 ORTHO05D000700 1.4e-07 60.5 45 55.6
MD15G1234400 Malus domestica HOM05D000242 ORTHO05D000700 1.4e-07 60.5 45 57.8
Potri.009G142300 Populus trichocarpa HOM05D000242 ORTHO05D000700 1.4e-07 60.5 41 61.0
Aa31LG3G150 Aethionema arabicum HOM05D000242 ORTHO05D000700 1.9e-07 60.1 46 52.2
Ah.02g126270 Amaranthus hybridus HOM05D019564 ORTHO05D021185 1.9e-07 60.1 46 50.0
DCAR_006242 Daucus carota HOM05D000242 ORTHO05D000700 1.9e-07 60.1 44 56.8
FvH4_2g16190 Fragaria vesca HOM05D000242 ORTHO05D000700 1.9e-07 60.1 69 42.0
Os05g0399300 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 1.9e-07 60.1 44 59.1
Psat5g000800 Pisum sativum HOM05D000242 ORTHO05D000700 1.9e-07 60.1 41 61.0
BcaB04g18670 Brassica carinata HOM05D000242 ORTHO05D000700 2.4e-07 59.7 47 55.3
CAN.G939.24 Capsicum annuum HOM05D052235 ORTHO05D020275 2.4e-07 59.7 76 44.7
Manes.18G145032 Manihot esculenta HOM05D000242 ORTHO05D001634 2.4e-07 59.7 42 59.5
Manes.18G145733 Manihot esculenta HOM05D000242 ORTHO05D001634 2.4e-07 59.7 42 59.5
Manes.18G145856 Manihot esculenta HOM05D000242 ORTHO05D001634 2.4e-07 59.7 42 59.5
Medtr3g118390 Medicago truncatula HOM05D000242 ORTHO05D000700 2.4e-07 59.7 41 61.0
FAN19G1568 Fragaria x ananassa HOM05D000242 ORTHO05D000700 3.2e-07 59.3 58 46.6
FAN20G1799 Fragaria x ananassa HOM05D000242 ORTHO05D000700 3.2e-07 59.3 41 61.0
MD02G1120200 Malus domestica HOM05D000242 ORTHO05D000700 3.2e-07 59.3 44 56.8
QL11p054876 Quercus lobata HOM05D000242 ORTHO05D000700 3.2e-07 59.3 57 47.4
SMO296G0034 Selaginella moellendorffii HOM05D000242 ORTHO05D000700 3.2e-07 59.3 43 58.1
THA.LOC104820550 Tarenaya hassleriana HOM05D000242 ORTHO05D000700 3.2e-07 59.3 39 56.4
FvH4_1g10661 Fragaria vesca HOM05D000242 ORTHO05D000700 4.2e-07 58.9 58 46.6
FAN24G0440 Fragaria x ananassa HOM05D000242 ORTHO05D000700 4.2e-07 58.9 41 61.0
FAN24G2936 Fragaria x ananassa HOM05D000242 ORTHO05D000700 4.2e-07 58.9 41 61.0
Manes.18G145692 Manihot esculenta HOM05D000242 ORTHO05D001634 4.2e-07 58.9 42 59.5
Os06g0726100 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 4.2e-07 58.9 45 55.6
TPR.G38539 Trifolium pratense HOM05D000242 ORTHO05D000700 4.2e-07 58.9 41 61.0
CANSAT25G3141 Cannabis sativa HOM05D000242 ORTHO05D000700 5.4e-07 58.5 39 61.5
AUR62027878 Chenopodium quinoa HOM05D000242 ORTHO05D000700 5.4e-07 58.5 46 56.5
Haze_02027 Corylus avellana HOM05D000242 ORTHO05D000700 5.4e-07 58.5 41 58.5
CsaV3_6G047760 Cucumis sativus L. HOM05D000242 ORTHO05D000700 5.4e-07 58.5 47 53.2
DCAR_006241 Daucus carota HOM05D000242 ORTHO05D000700 5.4e-07 58.5 44 54.5
FAN15G0529 Fragaria x ananassa HOM05D000242 ORTHO05D000700 5.4e-07 58.5 65 44.6
FAN28G2400 Fragaria x ananassa HOM05D000242 ORTHO05D000700 5.4e-07 58.5 62 45.2
QL02p099147 Quercus lobata HOM05D000242 ORTHO05D000700 5.4e-07 58.5 49 51.0
VMungo1309G2616 Vigna mungo HOM05D000242 ORTHO05D000700 5.4e-07 58.5 49 53.1
AL3G14840 Arabidopsis lyrata HOM05D002072 ORTHO05D001634 7.1e-07 58.2 47 53.2
A05p36960 Brassica napus HOM05D000242 ORTHO05D000700 7.1e-07 58.2 44 52.3
BraA05t22496Z Brassica rapa HOM05D000242 ORTHO05D000700 7.1e-07 58.2 44 52.3
Cfa005341 Carpinus fangiana HOM05D000242 ORTHO05D000700 7.1e-07 58.2 41 58.5
CiPaw.05G050500 Carya illinoinensis HOM05D000242 ORTHO05D000700 7.1e-07 58.2 44 54.5
Duzib132G0684 Durio zibethinus HOM05D000242 ORTHO05D000700 7.1e-07 58.2 42 54.8
Potri.009G141800 Populus trichocarpa HOM05D000242 ORTHO05D000700 7.1e-07 58.2 41 58.5
BcaB06g25534 Brassica carinata HOM05D000242 ORTHO05D000700 9.3e-07 57.8 44 52.3
BcaC05g29261 Brassica carinata HOM05D000242 ORTHO05D000700 9.3e-07 57.8 44 52.3
BolC5t34207H Brassica oleracea HOM05D000242 ORTHO05D000700 9.3e-07 57.8 44 52.3
Carub.0003s1183 Capsella rubella HOM05D000242 ORTHO05D000700 9.3e-07 57.8 40 55.0
Manes.04G065800 Manihot esculenta HOM05D000242 ORTHO05D000700 9.3e-07 57.8 40 57.5
Peaxi162Scf00078g01219 Petunia axillaris HOM05D000242 ORTHO05D000700 9.3e-07 57.8 64 43.8
Sp3g03570 Schrenkiella parvula HOM05D002072 ORTHO05D001634 9.3e-07 57.8 47 53.2
TWI79G0157 Tripterygium wilfordii HOM05D000242 ORTHO05D000700 9.3e-07 57.8 41 58.5
C05p55410 Brassica napus HOM05D000242 ORTHO05D000700 1.2e-06 57.4 44 52.3
Cpa.g.sc183.6 Carica papaya HOM05D000242 ORTHO05D000700 1.2e-06 57.4 40 57.5
CiPaw.05G090500 Carya illinoinensis HOM05D000242 ORTHO05D000700 1.2e-06 57.4 41 58.5
Ca_15415_v3 Cicer arietinum L. HOM05D000242 ORTHO05D000700 1.2e-06 57.4 39 61.5
MELO3C007966.2 Cucumis melo HOM05D000242 ORTHO05D000700 1.2e-06 57.4 39 56.4
Hma1.2p1_0674F.1_g201570 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 1.2e-06 57.4 46 54.3
Manes.11G106100 Manihot esculenta HOM05D000242 ORTHO05D000700 1.2e-06 57.4 40 60.0
Nn6g31764 Nelumbo nucifera HOM05D000242 ORTHO05D000700 1.2e-06 57.4 44 52.3
Os03g0418000 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 1.2e-06 57.4 44 54.5
QL02p099124 Quercus lobata HOM05D000242 ORTHO05D000700 1.2e-06 57.4 45 53.3
RcHm_v2.0_Chr2g0097821 Rosa chinensis HOM05D000242 ORTHO05D000700 1.2e-06 57.4 45 51.1
Sp3g10630 Schrenkiella parvula HOM05D000242 ORTHO05D000700 1.2e-06 57.4 42 52.4
Hund27016 Selenicereus undatus HOM05D000242 ORTHO05D000700 1.2e-06 57.4 40 52.5
TPR.G35818 Trifolium pratense HOM05D000242 ORTHO05D000700 1.2e-06 57.4 41 58.5
Atru.chr3.946 Acer truncatum HOM05D000242 ORTHO05D000700 1.6e-06 57.0 46 54.3
Actinidia22915 Actinidia chinensis HOM05D000242 ORTHO05D000700 1.6e-06 57.0 42 59.5
AT3G04720 Arabidopsis thaliana HOM05D002072 ORTHO05D001634 1.6e-06 57.0 47 51.1
CAN.G234.13 Capsicum annuum HOM05D000242 ORTHO05D000700 1.6e-06 57.0 41 53.7
Os05g0399400 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 1.6e-06 57.0 41 58.5
Peaxi162Scf00875g00019 Petunia axillaris HOM05D000242 ORTHO05D000700 1.6e-06 57.0 45 53.3
Potri.009G141700 Populus trichocarpa HOM05D000242 ORTHO05D000700 1.6e-06 57.0 41 56.1
QL02p099632 Quercus lobata HOM05D000242 ORTHO05D000700 1.6e-06 57.0 45 53.3
QL03p027105 Quercus lobata HOM05D002072 ORTHO05D001634 1.6e-06 57.0 42 52.4
RcHm_v2.0_Chr6g0279841 Rosa chinensis HOM05D000242 ORTHO05D000700 1.6e-06 57.0 41 58.5
Sabra04G0122700 Salix brachista HOM05D000242 ORTHO05D000700 1.6e-06 57.0 46 54.3
BcaB04g18677 Brassica carinata HOM05D000242 ORTHO05D018679 2.1e-06 56.6 42 52.4
CANSAT54G0403 Cannabis sativa HOM05D002072 ORTHO05D001634 2.1e-06 56.6 51 51.0
Hma1.2p1_0552F.1_g177590 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 2.1e-06 56.6 39 59.0
Pp3c7_25120 Physcomitrium patens HOM05D000852 ORTHO05D000657 2.1e-06 56.6 44 52.3
Potri.009G142000 Populus trichocarpa HOM05D000242 ORTHO05D000700 2.1e-06 56.6 41 56.1
Prupe.7G178500 Prunus persica HOM05D000242 ORTHO05D000700 2.1e-06 56.6 45 51.1
QL11p054896 Quercus lobata HOM05D000242 ORTHO05D000700 2.1e-06 56.6 58 48.3
TAR099G0003 Trochodendron aralioides HOM05D000242 ORTHO05D000700 2.1e-06 56.6 40 57.5
TAR628G0983 Trochodendron aralioides HOM05D000242 ORTHO05D000700 2.1e-06 56.6 40 57.5
Zm00001eb272090 Zea mays HOM05D000242 ORTHO05D000700 2.1e-06 56.6 41 58.5
BcaB04g21074 Brassica carinata HOM05D000242 ORTHO05D000700 2.7e-06 56.2 44 50.0
ClCG01G020800 Citrullus lanatus HOM05D000242 ORTHO05D000700 2.7e-06 56.2 67 41.8
Thhalv10021503m.g Eutrema salsugineum HOM05D002072 ORTHO05D001634 2.7e-06 56.2 47 51.1
EL10Ac6g14860 Beta vulgaris HOM05D000242 ORTHO05D012818 3.5e-06 55.8 39 53.8
Carub.0003s0389 Capsella rubella HOM05D002072 ORTHO05D001634 3.5e-06 55.8 47 48.9
AUR62027877 Chenopodium quinoa HOM05D000242 ORTHO05D000700 3.5e-06 55.8 46 54.3
Hma1.2p1_0552F.1_g177600 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 3.5e-06 55.8 41 53.7
MBI08_g04935_MAGBIO Magnolia biondii HOM05D000242 ORTHO05D000700 3.5e-06 55.8 59 44.1
Manes.04G065900 Manihot esculenta HOM05D000242 ORTHO05D000700 3.5e-06 55.8 40 52.5
Aa31sc325G10 Aethionema arabicum HOM05D000242 ORTHO05D000700 4.6e-06 55.5 40 52.5
AT3G12500 Arabidopsis thaliana HOM05D000242 ORTHO05D000700 4.6e-06 55.5 40 52.5
arahy.Tifrunner.gnm1.ann1.X7NLR0 Arachis hypogaea HOM05D002072 ORTHO05D001634 4.6e-06 55.5 48 52.1
BcaC01g04350 Brassica carinata HOM05D002072 ORTHO05D001634 4.6e-06 55.5 68 41.2
C03p41130 Brassica napus HOM05D002072 ORTHO05D001634 4.6e-06 55.5 68 41.2
CARHR087000 Cardamine hirsuta HOM05D000242 ORTHO05D000700 4.6e-06 55.5 40 52.5
CARHR151150 Cardamine hirsuta HOM05D000242 ORTHO05D000700 4.6e-06 55.5 40 52.5
AUR62019040 Chenopodium quinoa HOM05D000242 ORTHO05D000700 4.6e-06 55.5 40 55.0
Cc07_g11550 Coffea canephora HOM05D000242 ORTHO05D000700 4.6e-06 55.5 45 51.1
Duzib132G0831 Durio zibethinus HOM05D000242 ORTHO05D000700 4.6e-06 55.5 42 54.8
Lj9C72T1 Lonicera japonica HOM05D000242 ORTHO05D000700 4.6e-06 55.5 46 47.8
Manes.04G067900 Manihot esculenta HOM05D000242 ORTHO05D000700 4.6e-06 55.5 44 52.3
Os06g0726200 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 4.6e-06 55.5 45 53.3
Peaxi162Scf00111g00046 Petunia axillaris HOM05D000242 ORTHO05D001634 4.6e-06 55.5 39 59.0
SEGI_21618 Sequoiadendron giganteum HOM05D000242 ORTHO05D000700 4.6e-06 55.5 38 55.3
AL3G24130 Arabidopsis lyrata HOM05D000242 ORTHO05D000700 6.0e-06 55.1 40 52.5
BcaC09g48247 Brassica carinata HOM05D000242 ORTHO05D000700 6.0e-06 55.1 44 52.3
BcaNung05706 Brassica carinata HOM05D000242 ORTHO05D000700 6.0e-06 55.1 60 43.3
A03p33830 Brassica napus HOM05D002072 ORTHO05D001634 6.0e-06 55.1 68 38.2
C01p52740 Brassica napus HOM05D000242 ORTHO05D000700 6.0e-06 55.1 44 52.3
C03p45630 Brassica napus HOM05D000242 ORTHO05D000700 6.0e-06 55.1 60 43.3
BolC1t05211H Brassica oleracea HOM05D000242 ORTHO05D000700 6.0e-06 55.1 44 52.3
BraA03t12557Z Brassica rapa HOM05D002072 ORTHO05D001634 6.0e-06 55.1 68 38.2
Duzib132G0139 Durio zibethinus HOM05D000242 ORTHO05D000700 6.0e-06 55.1 41 53.7
Gohir.D11G170951 Gossypium hirsutum HOM05D000242 ORTHO05D000700 6.0e-06 55.1 40 60.0
Lj2g0003187 Lotus japonicus HOM05D000242 ORTHO05D000700 6.0e-06 55.1 41 56.1
Manes.18G146601 Manihot esculenta HOM05D000242 ORTHO05D001634 6.0e-06 55.1 40 57.5
Manes.18G146701 Manihot esculenta HOM05D000242 ORTHO05D001634 6.0e-06 55.1 40 57.5
Nitab4.5_0001592g0030 Nicotiana tabacum HOM05D002072 ORTHO05D001634 6.0e-06 55.1 60 43.3
Rhsim05G0049600 Rhododendron simsii HOM05D000242 ORTHO05D000700 6.0e-06 55.1 44 52.3
Sabra07G0050500 Salix brachista HOM05D000242 ORTHO05D000700 6.0e-06 55.1 41 53.7
TWI79G1595 Tripterygium wilfordii HOM05D000242 ORTHO05D000700 6.0e-06 55.1 41 56.1
ATR0661G299 Amborella trichopoda HOM05D000242 ORTHO05D000700 7.8e-06 54.7 58 44.8
CSS0043153 Camellia sinensis var. sinensis HOM05D000242 ORTHO05D000700 7.8e-06 54.7 41 53.7
CSS0047426 Camellia sinensis var. sinensis HOM05D000242 ORTHO05D000700 7.8e-06 54.7 41 53.7
CARHR078970 Cardamine hirsuta HOM05D002072 ORTHO05D001634 7.8e-06 54.7 66 40.9
COL.COLO4_22526 Corchorus olitorius HOM05D000242 ORTHO05D000700 7.8e-06 54.7 44 54.5
Eucgr.I01495 Eucalyptus grandis HOM05D000242 ORTHO05D000700 7.8e-06 54.7 41 53.7
Thhalv10021149m.g Eutrema salsugineum HOM05D000242 ORTHO05D000700 7.8e-06 54.7 40 52.5
FAN28G2231 Fragaria x ananassa HOM05D000242 ORTHO05D000700 7.8e-06 54.7 55 43.6
Manes.18G146501 Manihot esculenta HOM05D000242 ORTHO05D001634 7.8e-06 54.7 40 57.5
Pp3c11_1420 Physcomitrium patens HOM05D000852 ORTHO05D000657 7.8e-06 54.7 44 54.5
Prupe.8G174900 Prunus persica HOM05D000242 ORTHO05D000700 7.8e-06 54.7 41 56.1


User provided reference genes

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