Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 5.3e-25 116.7 52 100.0
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 2.6e-24 114.4 52 98.1
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 2.6e-24 114.4 52 98.1
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 1.0e-23 112.5 52 96.2
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 3.2e-22 107.5 52 84.6
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 3.2e-22 107.5 52 90.4
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 4.2e-22 107.1 52 86.5
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 5.5e-22 106.7 52 90.4
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 5.5e-22 106.7 52 90.4
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 7.2e-22 106.3 51 84.3
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 9.4e-22 105.9 52 82.7
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 1.2e-21 105.5 52 82.7
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.2e-21 105.5 52 82.7
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.2e-21 105.5 52 82.7
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 1.2e-21 105.5 52 80.8
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 1.6e-21 105.1 52 84.6
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 2.1e-21 104.8 52 84.6
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 2.7e-21 104.4 52 82.7
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 2.7e-21 104.4 52 82.7
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.7e-21 104.4 52 80.8
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 2.7e-21 104.4 52 82.7
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 2.7e-21 104.4 52 84.6
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 4.7e-21 103.6 52 80.8
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 4.7e-21 103.6 52 80.8
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 4.7e-21 103.6 52 80.8
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 6.1e-21 103.2 52 80.8
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 8.0e-21 102.8 52 78.8
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 8.0e-21 102.8 52 80.8
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 8.0e-21 102.8 52 80.8
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 8.0e-21 102.8 52 80.8
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 8.0e-21 102.8 52 80.8
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 1.0e-20 102.4 52 80.8
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.0e-20 102.4 52 82.7
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.0e-20 102.4 52 82.7
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 1.0e-20 102.4 52 78.8
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 1.0e-20 102.4 52 84.6
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.0e-20 102.4 52 78.8
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 1.4e-20 102.1 52 80.8
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 1.4e-20 102.1 52 78.8
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 1.4e-20 102.1 52 82.7
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 82.7
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 84.6
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 84.6
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 78.8
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 78.8
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 82.7
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 82.7
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 76.9
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 84.6
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 80.8
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 78.8
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.8e-20 101.7 52 80.8
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 2.3e-20 101.3 52 78.8
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 2.3e-20 101.3 52 80.8
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 3.0e-20 100.9 52 80.8
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 3.0e-20 100.9 52 80.8
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 3.0e-20 100.9 52 80.8
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 3.0e-20 100.9 52 80.8
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 3.0e-20 100.9 52 80.8
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 4.0e-20 100.5 52 80.8
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 4.0e-20 100.5 52 76.9
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 4.0e-20 100.5 52 78.8
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 4.0e-20 100.5 52 78.8
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 80.8
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 80.8
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 80.8
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 80.8
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 80.8
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 76.9
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 76.9
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 5.2e-20 100.1 52 78.8
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 6.7e-20 99.8 52 80.8
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 6.7e-20 99.8 52 80.8
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 8.8e-20 99.4 52 78.8
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 8.8e-20 99.4 52 78.8
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 2.0e-19 98.2 52 78.8
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 2.0e-19 98.2 52 73.1
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 2.6e-19 97.8 52 76.9
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 2.6e-19 97.8 52 76.9
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.6e-19 97.8 52 76.9
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 2.6e-19 97.8 52 78.8
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 4.4e-19 97.1 52 76.9
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 1.3e-18 95.5 50 78.0
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 1.3e-18 95.5 52 76.9
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 1.3e-18 95.5 52 76.9
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 1.7e-18 95.1 52 71.2
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.4e-17 92.0 52 73.1
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 1.4e-17 92.0 52 73.1
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 2.7e-16 87.8 46 78.3
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 3.5e-16 87.4 48 70.8
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.5e-14 82.0 52 65.4
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.2e-14 80.5 46 73.9
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 5.5e-14 80.1 45 66.7
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 2.3e-12 74.7 52 53.8
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 4.0e-12 73.9 52 57.7
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 5.2e-12 73.6 37 81.1
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 9.8e-11 69.3 39 71.8
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 1.7e-10 68.6 49 57.1
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 6.3e-10 66.6 37 81.1
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 1.4e-09 65.5 52 51.9
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 5.4e-09 63.5 34 76.5
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 1.1e-06 55.8 30 76.7


User provided reference genes

Program Settings