Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.2e-103 378.6 220 100.0
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 4.5e-89 331.6 218 89.9
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 4.9e-88 328.2 220 82.3
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 8.4e-88 327.4 220 85.0
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.2e-86 323.6 220 88.6
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 7.9e-78 294.3 226 77.9
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 3.3e-76 288.9 220 81.8
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.0e-72 277.3 226 74.8
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.6e-54 215.7 122 87.7
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 7.9e-54 214.5 170 82.4
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 7.9e-54 214.5 195 71.8
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 1.1e-52 210.7 195 71.3
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 1.5e-52 210.3 195 60.5
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 2.6e-52 209.5 195 71.3
Solyc11g013710.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.7e-38 162.9 133 83.5
Solyc11g013720.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.4e-37 160.6 133 82.0
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 1.5e-36 157.1 124 62.1
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 1.8e-34 150.2 125 60.0
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 3.1e-34 149.4 126 61.1
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 4.1e-34 149.1 126 61.1
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 4.1e-34 149.1 126 59.5
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 4.5e-33 145.6 125 59.2
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.6e-30 136.0 122 59.8
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 3.6e-30 136.0 122 59.0
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 6.1e-30 135.2 125 57.6
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 5.2e-29 132.1 119 59.7
Sopen05g022510 Solanum pennellii HOM05D000651 ORTHO05D003990 2.1e-22 110.2 110 68.2
Solyc05g026260.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 4.7e-22 109.0 109 67.9
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.0e-21 107.8 126 47.6
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 5.2e-21 105.5 182 37.9
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 4.9e-19 99.0 127 44.9
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 6.4e-19 98.6 117 40.2
Solyc05g026250.3 Solanum lycopersicum HOM05D000651 ORTHO05D051254 3.5e-17 92.8 122 44.3
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 5.9e-17 92.0 121 41.3
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 1.0e-16 91.3 124 38.7
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.0e-16 91.3 121 41.3
Solyc10g075173.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.7e-16 90.5 108 69.4
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 3.0e-16 89.7 114 39.5
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 5.0e-16 89.0 124 39.5
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 6.6e-16 88.6 105 42.9
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 6.6e-16 88.6 110 42.7
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 8.6e-16 88.2 103 45.6
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 8.6e-16 88.2 117 41.9
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 1.5e-15 87.4 103 46.6
Solyc10g150139.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.5e-15 86.7 55 76.4
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 7.3e-15 85.1 111 40.5
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 9.5e-15 84.7 113 40.7
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 9.5e-15 84.7 115 44.3
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 1.2e-14 84.3 125 37.6
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 2.1e-14 83.6 188 31.4
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 2.8e-14 83.2 113 40.7
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.8e-14 83.2 97 44.3
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 4.7e-14 82.4 87 46.0
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 4.7e-14 82.4 123 38.2
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 4.7e-14 82.4 120 36.7
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 6.2e-14 82.0 125 37.6
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 6.2e-14 82.0 110 39.1
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 6.2e-14 82.0 104 40.4
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 6.2e-14 82.0 117 37.6
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 6.2e-14 82.0 95 43.2
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 6.2e-14 82.0 117 38.5
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 8.0e-14 81.6 103 43.7
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.0e-13 81.3 124 36.3
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.0e-13 81.3 124 36.3
Sopen05g022500 Solanum pennellii HOM05D000651 ORTHO05D003990 1.0e-13 81.3 45 82.2
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 1.4e-13 80.9 201 31.3
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 1.4e-13 80.9 123 35.0
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 1.8e-13 80.5 201 31.8
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 1.8e-13 80.5 80 51.2
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 3.1e-13 79.7 201 31.3
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 5.2e-13 79.0 115 39.1
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 6.8e-13 78.6 83 45.8
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 6.8e-13 78.6 118 37.3
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 8.9e-13 78.2 102 43.1
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 8.9e-13 78.2 69 55.1
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 8.9e-13 78.2 69 55.1
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 8.9e-13 78.2 122 36.9
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.2e-12 77.8 69 55.1
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 2.0e-12 77.0 114 37.7
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 2.6e-12 76.6 123 34.1
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 2.6e-12 76.6 123 34.1
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 2.6e-12 76.6 112 38.4
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 3.4e-12 76.3 117 37.6
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 4.4e-12 75.9 111 35.1
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 5.8e-12 75.5 103 36.9
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 7.5e-12 75.1 120 39.2
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 7.5e-12 75.1 77 45.5
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 7.5e-12 75.1 103 41.7
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 9.8e-12 74.7 120 36.7
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 1.3e-11 74.3 83 44.6
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 1.3e-11 74.3 114 39.5
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 1.7e-11 73.9 109 37.6
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 2.2e-11 73.6 71 47.9
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 2.2e-11 73.6 74 54.1
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 2.2e-11 73.6 112 35.7
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 3.7e-11 72.8 104 35.6
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 3.7e-11 72.8 117 39.3
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 4.9e-11 72.4 116 37.1
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 4.9e-11 72.4 81 45.7
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 4.9e-11 72.4 126 34.1
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 4.9e-11 72.4 123 32.5
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 4.9e-11 72.4 118 36.4
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 6.4e-11 72.0 71 46.5
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 6.4e-11 72.0 102 39.2
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 8.3e-11 71.6 90 41.1
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 8.3e-11 71.6 87 48.3
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.1e-10 71.2 73 46.6
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 1.1e-10 71.2 74 44.6
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 2.4e-10 70.1 74 50.0
Ah.13g073970 Amaranthus hybridus HOM05D000294 ORTHO05D003990 3.2e-10 69.7 102 37.3
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 3.2e-10 69.7 115 33.0
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 3.2e-10 69.7 111 38.7
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 7.0e-10 68.6 113 35.4
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 7.0e-10 68.6 103 35.0
Solyc11g013670.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 9.2e-10 68.2 125 57.6
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.2e-09 67.8 61 52.5
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.2e-09 67.8 62 53.2
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 1.2e-09 67.8 115 32.2
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 1.6e-09 67.4 137 32.8
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 1.6e-09 67.4 119 32.8
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 2.0e-09 67.0 116 37.1
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 2.7e-09 66.6 121 33.9
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 2.7e-09 66.6 194 32.5
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 3.5e-09 66.2 88 42.0
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 3.5e-09 66.2 79 45.6
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 4.6e-09 65.9 89 39.3
Zm00001eb427820 Zea mays HOM05D000651 ORTHO05D003990 4.6e-09 65.9 71 46.5
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 1.3e-08 64.3 64 53.1
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 1.7e-08 63.9 92 39.1
MBI19_g32901_MAGBIO Magnolia biondii HOM05D008822 ORTHO05D003990 1.7e-08 63.9 64 51.6
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 2.3e-08 63.5 97 39.2
Zm00001eb075100 Zea mays HOM05D000651 ORTHO05D003990 2.3e-08 63.5 71 45.1
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 3.0e-08 63.2 64 50.0
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 3.0e-08 63.2 122 36.1
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 3.0e-08 63.2 103 35.9
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 3.0e-08 63.2 102 32.4
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 3.9e-08 62.8 73 46.6
DCAR_015823 Daucus carota HOM05D008822 ORTHO05D003990 3.9e-08 62.8 72 44.4
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 5.0e-08 62.4 110 30.9
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 5.0e-08 62.4 107 39.3
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 6.6e-08 62.0 62 50.0
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 8.6e-08 61.6 111 33.3
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 1.1e-07 61.2 99 35.4
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 1.1e-07 61.2 88 39.8
HPP92_003328 Vanilla planifolia HOM05D032523 ORTHO05D003990 1.1e-07 61.2 78 38.5
HPP92_003335 Vanilla planifolia HOM05D032523 ORTHO05D003990 1.1e-07 61.2 78 38.5
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 1.5e-07 60.8 105 39.0
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 1.5e-07 60.8 105 39.0
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 1.5e-07 60.8 106 37.7
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 1.5e-07 60.8 72 38.9
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 1.9e-07 60.5 55 50.9
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 1.9e-07 60.5 102 37.3
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 3.3e-07 59.7 105 36.2
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 3.3e-07 59.7 84 39.3
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 4.3e-07 59.3 65 46.2
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 7.3e-07 58.5 69 42.0
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 9.5e-07 58.2 101 38.6
Glyma.11G216300 Glycine max HOM05D002447 ORTHO05D001298 9.5e-07 58.2 58 48.3
Lsat_1_v5_gn_2_12280 Lactuca sativa HOM05D003305 ORTHO05D001298 9.5e-07 58.2 78 34.6
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 9.5e-07 58.2 61 49.2
FAN17G1493 Fragaria x ananassa HOM05D000137 ORTHO05D000503 2.1e-06 57.0 46 56.5
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 2.1e-06 57.0 175 27.4
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 2.8e-06 56.6 52 53.8
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 3.6e-06 56.2 74 44.6
MD14G1235000 Malus domestica HOM05D003305 ORTHO05D001298 3.6e-06 56.2 64 39.1
PSO017G4429 Papaver somniferum HOM05D003305 ORTHO05D001298 4.7e-06 55.8 99 31.3
FvH4_1g28760 Fragaria vesca HOM05D002447 ORTHO05D001298 6.2e-06 55.5 60 45.0
FAN19G0233 Fragaria x ananassa HOM05D002447 ORTHO05D001298 6.2e-06 55.5 60 45.0
TPR.G24921 Trifolium pratense HOM05D002447 ORTHO05D001298 6.2e-06 55.5 57 47.4


User provided reference genes

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