Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.8e-70 268.9 173 100.0
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 7.6e-60 234.2 170 78.8
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.7e-59 233.0 170 86.5
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 3.5e-57 225.3 170 79.4
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 7.4e-55 217.6 170 82.4
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.6e-54 216.5 170 85.3
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.1e-54 216.1 122 91.0
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 3.1e-53 212.2 121 89.3
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 5.0e-51 204.9 176 73.9
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 7.1e-50 201.1 176 73.3
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 4.2e-42 175.3 176 66.5
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 4.6e-41 171.8 176 55.7
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 1.0e-40 170.6 176 65.9
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 1.1e-39 167.2 176 64.8
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 2.9e-35 152.5 122 62.3
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 5.1e-32 141.7 123 59.3
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 3.3e-31 139.0 125 59.2
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 4.4e-31 138.7 125 60.0
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.3e-30 137.1 115 62.6
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.7e-30 136.7 125 58.4
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.9e-28 128.3 122 56.6
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 5.9e-28 128.3 122 55.7
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 7.7e-28 127.9 119 58.8
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 1.9e-26 123.2 123 55.3
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 3.6e-17 92.4 122 42.6
Solyc05g026250.3 Solanum lycopersicum HOM05D000651 ORTHO05D051254 1.0e-16 90.9 175 49.1
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 2.3e-16 89.7 117 38.5
Solyc11g013710.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.6e-15 86.3 83 81.9
Solyc11g013720.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.4e-15 85.9 83 79.5
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 4.4e-15 85.5 125 40.8
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 9.8e-15 84.3 127 41.7
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 3.7e-14 82.4 113 43.4
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 8.3e-14 81.3 121 40.5
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.4e-13 80.5 121 40.5
Solyc10g150139.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.1e-13 79.3 53 73.6
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 2.0e-12 76.6 104 45.2
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.5e-12 75.9 111 41.4
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 3.5e-12 75.9 120 37.5
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 3.5e-12 75.9 123 36.6
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 4.5e-12 75.5 105 42.9
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 7.7e-12 74.7 92 44.6
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 7.7e-12 74.7 114 36.8
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 1.0e-11 74.3 111 39.6
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 1.3e-11 73.9 121 36.4
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.3e-11 73.9 111 40.5
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 1.3e-11 73.9 104 44.2
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 2.2e-11 73.2 117 38.5
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 2.2e-11 73.2 115 38.3
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 2.9e-11 72.8 121 36.4
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 2.9e-11 72.8 121 36.4
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 2.9e-11 72.8 92 43.5
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 5.0e-11 72.0 99 40.4
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 5.0e-11 72.0 123 34.1
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 5.0e-11 72.0 114 39.5
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 6.5e-11 71.6 113 38.1
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 1.1e-10 70.9 115 40.0
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 1.5e-10 70.5 115 37.4
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 1.5e-10 70.5 95 37.9
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 1.9e-10 70.1 100 39.0
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 2.5e-10 69.7 97 39.2
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 2.5e-10 69.7 120 35.8
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 3.2e-10 69.3 103 40.8
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 3.2e-10 69.3 113 37.2
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 3.2e-10 69.3 119 35.3
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 3.2e-10 69.3 113 35.4
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 4.2e-10 68.9 103 39.8
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 5.5e-10 68.6 116 35.3
Solyc05g026260.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.5e-10 68.6 86 62.8
Solyc11g013670.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.5e-10 68.6 80 88.8
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 9.4e-10 67.8 81 44.4
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 1.2e-09 67.4 106 37.7
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 1.2e-09 67.4 113 33.6
Sopen05g022500 Solanum pennellii HOM05D000651 ORTHO05D003990 1.2e-09 67.4 45 73.3
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 1.6e-09 67.0 71 50.7
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 2.1e-09 66.6 91 45.1
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 2.1e-09 66.6 114 36.0
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 2.1e-09 66.6 113 34.5
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 2.7e-09 66.2 116 35.3
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 2.7e-09 66.2 118 34.7
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 3.6e-09 65.9 103 38.8
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 3.6e-09 65.9 106 37.7
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 3.6e-09 65.9 88 42.0
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 3.6e-09 65.9 85 48.2
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 4.7e-09 65.5 112 39.3
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 6.1e-09 65.1 114 35.1
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 6.1e-09 65.1 114 35.1
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 6.1e-09 65.1 73 52.1
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 8.0e-09 64.7 112 39.3
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.0e-08 64.3 76 46.1
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 1.0e-08 64.3 99 39.4
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 1.0e-08 64.3 119 31.9
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 1.0e-08 64.3 117 31.6
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 1.0e-08 64.3 73 45.2
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.4e-08 63.9 112 38.4
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 1.8e-08 63.5 117 36.8
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 1.8e-08 63.5 77 44.2
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 1.8e-08 63.5 81 43.2
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 2.3e-08 63.2 113 35.4
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 2.3e-08 63.2 112 33.9
Sopen05g022510 Solanum pennellii HOM05D000651 ORTHO05D003990 2.3e-08 63.2 87 58.6
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 3.0e-08 62.8 73 49.3
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 3.0e-08 62.8 103 35.9
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 3.0e-08 62.8 120 35.8
Solyc10g075173.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.0e-08 62.8 35 80.0
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 4.0e-08 62.4 81 46.9
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 4.0e-08 62.4 102 35.3
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 4.0e-08 62.4 72 45.8
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 5.2e-08 62.0 81 44.4
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 5.2e-08 62.0 143 30.1
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 5.2e-08 62.0 71 42.3
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 5.2e-08 62.0 68 45.6
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 8.8e-08 61.2 77 41.6
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 8.8e-08 61.2 84 44.0
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 8.8e-08 61.2 71 42.3
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 1.2e-07 60.8 70 42.9
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 1.2e-07 60.8 116 34.5
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 1.2e-07 60.8 120 34.2
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 2.6e-07 59.7 122 36.9
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 3.4e-07 59.3 115 32.2
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 3.4e-07 59.3 125 35.2
HPP92_003328 Vanilla planifolia HOM05D032523 ORTHO05D003990 5.7e-07 58.5 79 39.2
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 7.5e-07 58.2 115 37.4
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 1.3e-06 57.4 111 36.0
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 1.3e-06 57.4 95 32.6
HPP92_003335 Vanilla planifolia HOM05D032523 ORTHO05D003990 1.3e-06 57.4 79 38.0
Zm00001eb427820 Zea mays HOM05D000651 ORTHO05D003990 1.3e-06 57.4 71 43.7
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.7e-06 57.0 72 43.1
DCAR_015823 Daucus carota HOM05D008822 ORTHO05D003990 1.7e-06 57.0 72 43.1
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 2.2e-06 56.6 102 36.3
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 2.2e-06 56.6 122 34.4
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 2.2e-06 56.6 61 52.5
Zm00001eb075100 Zea mays HOM05D000651 ORTHO05D003990 2.2e-06 56.6 71 43.7
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 3.7e-06 55.8 62 46.8
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 6.3e-06 55.1 102 37.3
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 6.3e-06 55.1 102 37.3
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 6.3e-06 55.1 117 30.8
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 6.3e-06 55.1 102 36.3
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 8.3e-06 54.7 71 36.6


User provided reference genes

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