Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 8.0e-112 407.1 210 100.0
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 3.4e-102 375.2 195 99.0
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.1e-92 343.6 195 91.3
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 5.2e-87 324.7 195 86.7
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.6e-86 322.4 194 86.1
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 4.4e-86 321.6 194 85.6
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.7e-82 309.7 196 81.6
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 2.3e-82 309.3 196 80.1
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 5.0e-82 308.1 196 80.6
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 6.6e-82 307.8 195 79.5
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 4.3e-81 305.1 195 80.0
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 5.6e-81 304.7 196 80.6
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 9.5e-81 303.9 195 78.5
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.2e-80 303.5 196 78.1
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.6e-80 303.1 196 78.1
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 1.6e-80 303.1 196 77.0
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.1e-80 302.8 195 79.5
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 2.1e-80 302.8 196 77.6
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 2.1e-80 302.8 196 78.1
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 3.6e-80 302.0 196 80.1
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 6.2e-80 301.2 196 79.6
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 8.0e-80 300.8 196 77.6
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.1e-79 300.4 196 79.1
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 1.4e-79 300.1 195 79.0
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 1.4e-79 300.1 195 79.0
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.8e-79 299.7 196 76.5
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.8e-79 299.7 196 78.1
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.8e-79 299.7 196 76.0
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 2.3e-79 299.3 196 78.6
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 2.3e-79 299.3 196 78.1
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 5.2e-79 298.1 196 76.0
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 5.2e-79 298.1 193 79.3
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 8.9e-79 297.4 196 77.6
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.2e-78 297.0 195 78.5
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 3.4e-78 295.4 196 77.6
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 4.4e-78 295.0 196 78.1
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 5.8e-78 294.7 196 74.5
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 5.8e-78 294.7 196 74.5
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 7.5e-78 294.3 196 78.1
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 7.5e-78 294.3 202 76.7
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 9.8e-78 293.9 194 75.8
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 9.8e-78 293.9 196 75.5
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 9.8e-78 293.9 196 76.0
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 1.7e-77 293.1 196 74.0
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 2.2e-77 292.7 208 73.6
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 2.9e-77 292.4 195 75.4
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 3.7e-77 292.0 196 77.0
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 4.9e-77 291.6 196 74.5
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 6.4e-77 291.2 190 78.4
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 1.4e-76 290.0 196 73.5
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.4e-76 290.0 195 76.9
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 1.9e-76 289.7 196 73.0
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 1.9e-76 289.7 196 73.0
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 1.9e-76 289.7 196 73.0
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 2.4e-76 289.3 196 75.5
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.4e-76 289.3 226 69.9
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 4.1e-76 288.5 196 73.5
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 7.1e-76 287.7 195 74.9
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 9.2e-76 287.3 196 75.0
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 1.2e-75 287.0 190 77.9
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 1.6e-75 286.6 196 73.0
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 6.0e-75 284.6 196 75.5
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 6.0e-75 284.6 190 77.4
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 5.1e-74 281.6 197 71.6
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 6.6e-74 281.2 196 71.9
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 6.6e-74 281.2 196 72.4
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 8.6e-74 280.8 193 74.6
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 8.6e-74 280.8 193 74.6
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.1e-73 280.4 216 69.9
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.9e-73 279.6 195 72.3
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.9e-73 279.6 195 72.3
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 3.3e-73 278.9 195 72.3
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 5.6e-73 278.1 194 71.6
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 5.6e-73 278.1 195 72.3
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 1.2e-72 276.9 201 70.6
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 3.6e-72 275.4 190 73.7
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 1.4e-71 273.5 197 70.1
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 5.2e-71 271.6 195 68.2
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 4.4e-70 268.5 192 69.8
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 5.8e-70 268.1 192 70.3
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.3e-69 266.9 192 73.4
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 9.2e-68 260.8 196 71.9
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 2.1e-67 259.6 163 81.0
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.7e-66 256.5 193 68.4
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 3.9e-66 255.4 164 79.3
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 3.9e-66 255.4 196 65.8
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.1e-66 255.0 193 67.9
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.5e-65 252.7 215 62.8
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.8e-64 249.2 205 65.9
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 4.7e-64 248.4 236 58.9
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.2e-62 243.8 215 61.4
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.4e-62 242.3 198 66.7
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.7e-61 240.0 196 65.8
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 2.9e-61 239.2 167 71.3
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.8e-61 238.8 224 58.5
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.6e-59 233.4 163 71.8
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 4.6e-59 231.9 195 60.5
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 5.6e-57 224.9 190 60.5
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.1e-55 219.2 205 60.5
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 4.0e-55 218.8 186 62.9
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 2.7e-51 206.1 196 61.7
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 7.8e-51 204.5 115 84.3
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 1.3e-50 203.8 196 53.6
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 1.3e-48 197.2 189 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 6.9e-47 191.4 196 50.0
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 1.2e-46 190.7 122 82.0
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.0e-42 177.6 115 72.2
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 5.6e-41 171.8 123 74.8
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 1.3e-40 170.6 185 51.4
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 8.1e-40 167.9 128 68.0
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 1.2e-38 164.1 139 62.6
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.9e-36 156.8 106 72.6
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.9e-36 156.8 139 59.7
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.9e-36 156.8 139 59.7
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 8.2e-32 141.4 164 49.4
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.0e-26 122.9 93 73.1
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 2.5e-25 119.8 71 77.5
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 5.5e-20 102.1 55 80.0
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 8.8e-18 94.7 103 56.3
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 4.2e-12 75.9 70 65.7
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 2.2e-08 63.5 33 93.9
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 1.8e-07 60.5 33 87.9


User provided reference genes

Program Settings