Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 2.8e-216 755.0 375 100.0
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 3.2e-212 741.5 373 98.4
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 2.1e-187 659.1 376 87.0
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.5e-164 582.4 331 87.6
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 6.1e-163 577.8 335 86.6
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.3e-149 533.5 404 71.0
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 7.7e-142 507.7 336 74.4
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.6e-133 478.0 366 64.5
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.3e-132 475.7 341 68.0
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.1e-131 473.0 359 64.9
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.7e-128 463.4 332 67.5
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 3.7e-128 462.2 373 62.2
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.1e-127 458.8 340 66.2
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.0e-126 454.9 339 66.1
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 7.8e-126 454.5 372 62.6
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 2.3e-125 453.0 349 64.8
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.0e-125 451.8 344 65.1
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.5e-124 450.3 324 66.4
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.9e-124 449.9 368 62.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.9e-124 449.9 343 65.6
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 2.5e-124 449.5 374 59.9
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 4.3e-124 448.7 324 66.4
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 7.3e-124 448.0 324 66.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.6e-123 446.8 340 65.0
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 3.6e-123 445.7 334 64.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 4.7e-123 445.3 346 61.8
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 8.0e-123 444.5 334 64.4
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 8.0e-123 444.5 325 66.5
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.1e-122 444.1 324 66.0
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.1e-122 444.1 361 62.0
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.8e-122 443.4 330 65.8
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.3e-122 443.0 327 66.7
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.1e-122 442.6 326 66.0
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 4.0e-122 442.2 359 61.8
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 8.9e-122 441.0 340 62.9
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 8.9e-122 441.0 325 66.5
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.2e-121 440.7 297 73.7
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 3.4e-121 439.1 357 60.2
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.4e-121 439.1 322 65.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 4.4e-121 438.7 355 61.1
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 7.5e-121 438.0 355 60.8
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 7.5e-121 438.0 330 64.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.3e-120 437.2 347 61.1
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.3e-120 437.2 327 64.5
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.3e-120 437.2 336 63.4
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 1.3e-120 437.2 324 65.1
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.3e-120 437.2 349 61.9
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 1.3e-120 437.2 337 63.2
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.2e-120 436.4 327 64.5
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 3.7e-120 435.6 357 59.9
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 3.7e-120 435.6 335 63.0
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 6.4e-120 434.9 334 62.3
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 8.3e-120 434.5 327 63.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.1e-119 434.1 334 63.2
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.4e-119 433.7 329 65.0
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.9e-119 433.3 322 65.2
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.9e-119 433.3 323 64.1
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.4e-119 433.0 333 63.7
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 2.4e-119 433.0 329 63.2
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.4e-119 433.0 334 63.2
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 2.4e-119 433.0 320 64.7
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 3.2e-119 432.6 322 65.2
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 4.1e-119 432.2 335 63.0
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 4.1e-119 432.2 324 64.2
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.1e-119 431.4 332 62.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 3.5e-118 429.1 347 62.8
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.0e-117 427.6 344 61.3
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.3e-117 427.2 330 63.0
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.7e-117 426.8 329 62.6
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.7e-117 426.8 334 62.0
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 6.6e-117 424.9 349 59.6
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.6e-117 424.5 328 63.1
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.9e-116 423.3 311 66.2
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 4.3e-116 422.2 317 64.7
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.3e-116 421.4 311 65.9
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.8e-114 416.8 333 62.2
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 2.0e-113 413.3 332 58.7
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 4.4e-113 412.1 321 63.6
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.4e-113 412.1 323 63.5
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 7.5e-113 411.4 324 61.7
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.3e-112 410.6 335 62.7
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 4.1e-111 405.6 356 56.7
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.4e-111 405.2 346 57.8
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 9.2e-111 404.4 365 57.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 2.1e-110 403.3 326 59.8
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.0e-109 401.0 319 62.4
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-109 399.4 335 59.7
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.1e-109 398.7 335 59.7
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 2.5e-108 396.4 296 66.6
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 2.8e-107 392.9 379 52.5
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 4.7e-107 392.1 451 49.2
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 8.1e-107 391.3 320 60.0
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.1e-106 391.0 337 59.3
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 2.4e-106 389.8 340 57.1
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.1e-106 389.4 313 59.7
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 3.4e-105 386.0 340 56.8
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.9e-104 382.9 331 57.7
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.8e-104 382.5 268 66.0
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.5e-100 370.5 322 56.5
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.3e-100 369.4 325 58.5
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 7.3e-100 368.2 271 66.8
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 9.6e-100 367.9 286 62.6
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 8.1e-99 364.8 330 54.2
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.4e-98 364.0 360 54.4
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.8e-97 358.6 240 67.5
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 7.1e-95 351.7 311 58.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 7.1e-95 351.7 311 58.8
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 9.3e-95 351.3 319 57.7
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 7.8e-94 348.2 329 53.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.5e-92 343.2 267 62.9
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 7.3e-92 341.7 296 58.1
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 7.3e-92 341.7 294 59.2
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.3e-91 340.9 292 59.2
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.5e-89 334.0 277 54.5
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 3.4e-89 332.8 379 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.3e-85 320.9 274 55.1
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.3e-85 320.1 270 59.3
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 3.9e-85 319.3 324 50.6
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 6.9e-82 308.5 334 44.6
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.6e-78 297.4 206 68.0
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 4.8e-75 285.8 246 54.9
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 1.1e-74 284.6 201 66.7
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 3.0e-69 266.5 320 47.2
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-68 264.2 178 70.2
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.1e-66 258.1 304 41.4
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.1e-66 258.1 247 50.2
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 7.9e-62 241.9 387 40.3
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.9e-61 239.6 309 45.3
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.5e-60 236.9 211 57.3
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.0e-53 214.9 281 41.3
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 4.5e-49 199.5 258 41.1
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 2.9e-48 196.8 290 35.9
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.5e-47 193.7 160 57.5
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.7e-45 185.7 137 62.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.3e-43 181.4 156 54.5
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 2.2e-40 170.6 214 43.5
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 2.2e-40 170.6 197 48.2
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.9e-40 170.2 214 43.5
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 9.4e-39 165.2 330 34.5
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.7e-38 163.7 133 59.4
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.2e-31 140.2 154 46.8
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 5.2e-29 132.9 83 74.7
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 6.6e-24 115.9 276 31.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.2e-20 105.1 152 41.4
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 9.2e-18 95.5 118 45.8
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.3e-16 90.9 190 34.2
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 6.6e-16 89.4 71 56.3
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.9e-15 87.8 93 52.7
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.9e-15 87.8 93 52.7
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.2e-12 78.6 59 67.8
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.0e-12 77.8 114 43.0
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 7.5e-12 75.9 50 72.0
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.8e-09 65.9 42 64.3
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 5.0e-08 63.2 56 55.4


User provided reference genes

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