Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.7e-140 503.1 254 100.0
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 4.7e-135 485.0 257 96.1
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.9e-124 449.1 260 90.4
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.2e-119 433.7 233 93.1
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 8.7e-113 411.0 254 83.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.6e-111 406.8 236 87.3
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.3e-97 360.5 253 72.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.9e-97 359.0 253 71.9
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.1e-94 350.9 253 69.2
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.8e-94 350.1 252 69.8
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.4e-94 349.7 252 68.7
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.0e-94 349.0 253 71.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.0e-94 349.0 253 68.4
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 5.3e-94 348.6 258 70.9
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 6.9e-94 348.2 253 68.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 9.0e-94 347.8 254 70.9
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.5e-93 347.1 227 73.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.5e-93 347.1 252 69.4
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 4.5e-93 345.5 252 69.0
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 5.8e-93 345.1 253 67.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.3e-92 344.0 253 68.4
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.7e-92 343.6 245 71.4
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.9e-92 342.8 254 68.9
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.8e-92 342.4 254 68.9
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 4.9e-92 342.0 255 68.2
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.9e-91 340.1 248 69.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.9e-91 340.1 253 68.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 4.2e-91 339.0 254 70.1
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 5.5e-91 338.6 252 67.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 7.1e-91 338.2 222 75.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 7.1e-91 338.2 252 71.0
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 9.3e-91 337.8 223 72.6
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 9.3e-91 337.8 236 71.2
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.6e-90 337.0 234 71.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.1e-90 336.7 256 67.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.7e-90 336.3 234 71.8
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 3.5e-90 335.9 252 67.5
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.8e-89 333.6 252 66.3
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.8e-89 333.6 253 67.6
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.3e-89 333.2 227 72.7
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 3.0e-89 332.8 211 76.8
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 3.0e-89 332.8 276 64.5
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 3.0e-89 332.8 255 66.7
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 8.7e-89 331.3 218 74.8
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.1e-88 330.9 224 75.0
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.5e-88 329.7 238 72.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 5.6e-88 328.6 230 70.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 5.6e-88 328.6 252 65.9
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.6e-88 328.6 253 67.2
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.3e-87 327.4 254 66.5
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.1e-87 326.6 238 68.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 8.2e-87 324.7 274 62.8
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.2e-85 320.9 253 64.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.0e-85 320.1 252 67.1
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.6e-85 318.2 226 70.4
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.3e-84 317.4 215 71.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 4.9e-84 315.5 201 74.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 6.5e-84 315.1 226 69.9
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 6.5e-84 315.1 226 69.9
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.9e-83 313.5 252 63.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.5e-83 313.2 228 68.4
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.5e-83 313.2 254 63.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 3.2e-83 312.8 256 63.7
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 4.2e-83 312.4 250 65.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.5e-83 312.0 188 77.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 7.1e-83 311.6 189 78.3
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 7.1e-83 311.6 228 68.0
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 9.3e-83 311.2 255 64.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.2e-82 310.8 252 63.1
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.1e-82 310.1 249 65.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.1e-82 310.1 300 55.3
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.9e-81 305.8 254 63.4
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 5.1e-81 305.4 253 64.4
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.7e-80 302.0 213 70.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 9.7e-80 301.2 241 64.3
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.3e-79 300.8 255 65.1
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.6e-79 300.4 274 58.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.2e-79 300.1 231 64.9
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 6.3e-79 298.5 227 65.6
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 8.2e-79 298.1 184 76.6
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-78 297.4 253 63.2
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 5.3e-78 295.4 252 62.7
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.0e-77 293.5 227 67.8
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.6e-77 293.1 259 61.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 5.9e-77 292.0 227 67.4
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 7.6e-77 291.6 227 67.4
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.3e-76 290.8 222 67.6
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.7e-76 290.4 214 70.6
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.2e-76 290.0 255 62.4
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.9e-76 289.7 256 60.9
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.8e-76 289.3 221 68.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 6.5e-76 288.5 227 66.1
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.5e-76 288.5 255 62.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 6.5e-76 288.5 227 66.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.2e-75 286.2 227 66.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.2e-75 286.2 227 66.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.2e-75 285.8 250 62.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 5.5e-75 285.4 231 64.1
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 9.4e-75 284.6 263 58.2
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.2e-74 284.3 230 63.0
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 4.6e-74 282.3 255 59.6
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.1e-73 278.9 226 63.7
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 4.3e-72 275.8 193 69.9
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 3.1e-70 269.6 252 59.1
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.5e-69 267.3 180 72.8
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.9e-68 263.1 179 69.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.2e-66 257.7 195 66.7
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.4e-65 254.2 178 65.7
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.8e-62 243.8 185 67.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 8.5e-60 235.0 209 56.0
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.3e-55 221.1 140 77.9
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.6e-53 213.4 190 55.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.5e-53 213.0 217 49.3
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 4.5e-53 212.6 202 52.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.2e-48 198.0 213 49.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.7e-45 186.8 201 47.8
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.1e-43 181.4 173 60.1
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.9e-43 180.6 295 43.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.2e-43 179.9 124 65.3
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.8e-34 150.2 232 37.1
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.2e-33 146.0 96 74.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 6.8e-33 145.6 94 75.5
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 3.4e-32 143.3 177 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 3.1e-30 136.7 179 43.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.9e-29 132.5 97 64.9
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-28 128.6 216 31.0
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.1e-22 109.8 69 75.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 6.0e-21 105.9 197 32.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.8e-18 97.1 145 45.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 5.2e-17 92.8 94 51.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.5e-16 89.0 226 30.1
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.7e-13 80.5 208 28.4
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.1e-10 70.9 88 50.0
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.3e-09 67.4 98 37.8
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 2.9e-07 60.5 74 54.1
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 3.7e-07 60.1 187 24.1
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.4e-06 58.2 99 28.3
MCO02G422 Micromonas commoda HOM05D005493 ORTHO05D269126 9.2e-06 55.5 191 22.5


User provided reference genes

Program Settings