Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 3.8e-196 688.0 339 100.0
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 4.8e-191 671.0 339 97.1
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 6.5e-156 554.3 346 81.2
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 2.2e-148 529.3 334 80.8
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.5e-139 500.0 324 79.9
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 6.1e-130 468.0 251 90.4
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.3e-121 439.5 356 62.1
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 8.9e-121 437.6 341 63.9
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 1.1e-118 430.6 290 72.1
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 3.9e-116 422.2 291 69.8
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 8.6e-116 421.0 337 62.0
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 7.3e-115 417.9 332 62.7
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 3.6e-114 415.6 293 67.9
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 4.0e-113 412.1 208 95.2
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 2.4e-110 402.9 343 59.2
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 4.1e-110 402.1 289 66.4
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 4.1e-110 402.1 291 65.3
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.1e-109 399.8 333 60.4
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 4.6e-109 398.7 349 59.3
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 6.0e-109 398.3 293 65.2
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 6.0e-109 398.3 289 64.7
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 3.0e-108 396.0 336 58.0
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 2.5e-107 392.9 341 58.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 7.3e-107 391.3 288 65.3
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.1e-106 389.8 322 60.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 4.7e-106 388.7 285 64.2
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 4.7e-106 388.7 309 62.5
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 8.1e-106 387.9 319 61.1
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 2.4e-105 386.3 328 60.4
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 4.0e-105 385.6 333 58.3
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 4.0e-105 385.6 293 64.5
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.0e-105 385.6 288 65.3
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 4.0e-105 385.6 326 60.4
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 5.2e-105 385.2 331 58.9
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 5.2e-105 385.2 324 59.9
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 6.8e-105 384.8 341 58.9
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 8.9e-105 384.4 281 67.6
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 1.2e-104 384.0 333 61.3
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 1.2e-104 384.0 333 61.3
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 1.5e-104 383.6 333 58.0
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 2.0e-104 383.3 300 61.3
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 2.6e-104 382.9 289 64.4
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 3.4e-104 382.5 342 57.6
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 5.8e-104 381.7 293 63.8
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 1.7e-103 380.2 333 57.4
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.2e-103 379.8 342 57.3
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 2.9e-103 379.4 282 66.0
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 2.9e-103 379.4 318 60.7
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 2.9e-103 379.4 312 61.5
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 2.9e-103 379.4 290 64.8
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 2.9e-103 379.4 301 59.5
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 4.9e-103 378.6 329 58.7
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 4.9e-103 378.6 345 56.5
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 6.4e-103 378.3 342 57.3
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.4e-102 377.1 315 61.6
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.4e-102 377.1 290 64.8
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 1.4e-102 377.1 282 64.9
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 4.2e-102 375.6 282 63.5
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 4.2e-102 375.6 313 59.7
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 7.1e-102 374.8 301 58.5
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 1.6e-101 373.6 336 57.1
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 2.1e-101 373.2 328 57.6
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 6.0e-101 371.7 289 61.2
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 6.0e-101 371.7 401 49.6
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 7.8e-101 371.3 291 60.5
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 7.8e-101 371.3 291 63.2
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 5.1e-100 368.6 282 62.4
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 8.7e-100 367.9 288 63.9
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 2.5e-99 366.3 295 63.1
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 3.3e-99 365.9 345 56.5
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 7.3e-99 364.8 361 54.0
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.6e-98 363.6 287 62.4
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 8.1e-98 361.3 287 62.4
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.1e-97 360.9 282 61.0
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 3.1e-97 359.4 362 52.5
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.2e-96 357.5 308 58.8
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 4.4e-96 355.5 299 59.2
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 9.9e-96 354.4 247 68.0
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 2.4e-94 349.7 307 57.3
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 5.4e-94 348.6 287 57.8
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 7.1e-94 348.2 291 60.5
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 6.6e-92 341.7 285 60.4
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 9.6e-91 337.8 300 56.7
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 7.6e-88 328.2 282 59.9
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 1.9e-86 323.6 318 51.9
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 9.3e-86 321.2 289 55.0
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 3.5e-85 319.3 293 58.4
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 2.3e-84 316.6 275 57.8
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.0e-81 304.7 239 61.1
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.7e-77 293.1 285 53.7
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 3.0e-76 289.7 271 55.4
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 6.7e-76 288.5 334 47.3
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 1.1e-65 254.6 299 45.5
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 9.0e-65 251.5 317 43.5
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.9e-63 246.5 259 49.8
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 2.2e-58 230.3 300 41.7
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 7.7e-56 221.9 154 68.2
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 1.2e-53 214.5 324 40.7
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.8e-49 200.7 241 44.8
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 1.8e-49 200.7 202 52.0
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.4e-49 200.3 146 63.0
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 3.9e-44 183.0 279 40.5
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 3.3e-43 179.9 136 60.3
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 8.0e-37 158.7 362 32.0
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 4.4e-35 152.9 300 37.3
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 9.4e-30 135.2 162 45.1
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.8e-25 120.9 143 42.0
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 1.7e-23 114.4 80 65.0
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 4.0e-20 103.2 67 71.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 6.3e-18 95.9 99 46.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 3.1e-12 77.0 150 34.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 3.5e-08 63.5 150 30.7
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 7.8e-08 62.4 58 50.0
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 7.8e-08 62.4 58 50.0
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.0e-07 62.0 151 31.8
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.0e-07 62.0 151 31.1
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.7e-07 61.2 148 31.1
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.3e-07 60.8 208 29.8
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 3.0e-07 60.5 189 30.7
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-07 60.5 170 32.4
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-07 60.5 170 31.8
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-07 60.5 170 31.8
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 3.0e-07 60.5 163 31.3
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 5.0e-07 59.7 189 31.7
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 5.0e-07 59.7 189 30.7
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 5.0e-07 59.7 210 30.0
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 5.0e-07 59.7 164 31.7
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 6.6e-07 59.3 210 29.5
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 6.6e-07 59.3 190 32.1
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 8.6e-07 58.9 55 49.1
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.1e-06 58.5 162 30.9
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.1e-06 58.5 185 29.2
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 1.1e-06 58.5 193 30.6
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.1e-06 58.5 193 29.5
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.5e-06 58.2 222 27.9
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.5e-06 58.2 194 29.9
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.9e-06 57.8 194 29.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.5e-06 57.4 149 29.5
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.5e-06 57.4 195 29.2
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 3.3e-06 57.0 173 31.8
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 4.3e-06 56.6 215 28.4
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 4.3e-06 56.6 192 30.7
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 4.3e-06 56.6 150 29.3
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 4.3e-06 56.6 179 30.7
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.3e-06 56.6 170 28.2
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 5.6e-06 56.2 190 30.0
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 5.6e-06 56.2 167 33.5
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 7.3e-06 55.8 152 28.9


User provided reference genes

Program Settings