Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 7.0e-170 600.5 298 100.0
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 6.1e-150 534.3 298 89.6
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 3.6e-142 508.4 259 98.5
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 7.6e-124 447.6 300 77.7
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 5.1e-112 408.3 307 70.4
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 6.6e-112 407.9 275 76.4
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 3.6e-102 375.6 278 71.9
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.4e-98 363.6 271 67.9
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.9e-98 363.2 260 67.7
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.3e-98 360.9 251 70.9
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 4.6e-97 358.6 251 70.5
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 1.3e-96 357.1 246 70.7
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 3.0e-96 355.9 251 69.3
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 3.0e-96 355.9 249 69.9
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 6.7e-96 354.8 269 65.4
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 8.7e-96 354.4 267 65.5
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.1e-95 354.0 246 70.7
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.9e-95 353.2 277 62.1
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 7.4e-95 351.3 282 62.4
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.3e-94 350.5 251 68.5
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.6e-94 350.1 290 61.0
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.6e-94 350.1 279 61.3
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.6e-94 350.1 256 68.8
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 2.8e-94 349.4 247 67.2
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 8.1e-94 347.8 257 66.5
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 1.1e-93 347.4 268 66.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.1e-93 347.4 287 60.6
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 2.4e-93 346.3 269 65.1
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.4e-93 346.3 278 60.8
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.1e-93 345.9 278 60.8
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 4.0e-93 345.5 250 69.6
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.0e-93 345.5 268 64.9
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 6.9e-93 344.7 245 66.9
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 6.9e-93 344.7 263 65.0
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.2e-92 344.0 266 64.7
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 2.0e-92 343.2 246 67.5
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 2.6e-92 342.8 246 66.7
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 2.6e-92 342.8 268 64.6
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 2.6e-92 342.8 272 64.3
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 3.4e-92 342.4 268 64.6
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 3.4e-92 342.4 276 62.3
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.3e-91 340.5 276 61.2
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 2.2e-91 339.7 287 60.6
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.2e-91 339.7 262 64.9
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 2.9e-91 339.3 259 64.1
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.9e-91 339.3 246 65.4
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 3.8e-91 339.0 260 64.6
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 4.9e-91 338.6 269 63.9
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.9e-90 336.7 248 68.1
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 2.5e-90 336.3 272 61.0
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.5e-90 336.3 276 63.8
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.5e-90 336.3 259 63.7
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.2e-90 335.9 276 63.4
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 9.3e-90 334.3 301 59.5
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.6e-89 333.6 259 63.3
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 2.7e-89 332.8 246 65.9
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 3.5e-89 332.4 266 63.2
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 4.6e-89 332.0 287 59.6
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 7.9e-89 331.3 262 62.6
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 3.9e-88 328.9 242 68.2
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 8.7e-88 327.8 272 60.3
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.1e-87 327.4 271 60.5
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 1.5e-87 327.0 243 66.3
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 7.4e-87 324.7 271 59.8
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.3e-86 323.9 272 59.9
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 1.3e-86 323.9 271 60.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.6e-86 323.6 271 60.5
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.6e-86 323.6 248 65.3
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 2.1e-86 323.2 251 64.5
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 2.1e-86 323.2 273 60.1
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.8e-86 322.8 226 69.5
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 6.3e-86 321.6 271 60.9
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 1.4e-85 320.5 272 59.9
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-85 320.5 271 60.5
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 2.4e-85 319.7 246 65.9
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 6.9e-85 318.2 268 59.7
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.5e-84 317.0 246 65.4
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 1.5e-84 317.0 254 61.8
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 3.4e-84 315.8 245 65.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.7e-83 313.5 225 68.9
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 2.9e-83 312.8 283 58.0
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 3.2e-82 309.3 261 60.9
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 4.6e-81 305.4 245 59.6
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 7.9e-81 304.7 275 58.2
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 5.1e-80 302.0 244 62.7
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 1.1e-79 300.8 272 56.6
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 3.3e-79 299.3 209 69.9
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 5.7e-79 298.5 262 59.2
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.3e-78 297.4 221 65.6
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 8.2e-78 294.7 253 60.1
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 5.3e-77 292.0 244 62.3
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 1.2e-76 290.8 246 61.0
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.0e-72 277.7 269 56.1
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 4.5e-68 262.3 229 58.1
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 5.9e-68 261.9 210 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 7.0e-61 238.4 264 49.2
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 8.5e-59 231.5 234 48.7
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 2.0e-55 220.3 234 50.4
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 9.7e-55 218.0 178 60.1
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 1.3e-54 217.6 243 47.3
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 7.2e-50 201.8 165 61.8
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 7.2e-50 201.8 155 65.2
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.4e-45 187.6 268 41.4
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 1.0e-43 181.4 180 54.4
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 3.0e-40 169.9 257 40.5
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 3.0e-40 169.9 233 44.6
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 6.8e-40 168.7 168 57.1
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 1.4e-37 161.0 242 40.5
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.2e-31 141.4 107 62.6
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.9e-30 136.7 104 62.5
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 8.9e-24 115.2 120 53.3
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 3.0e-19 100.1 161 41.6
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 4.0e-16 89.7 68 60.3
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.9e-14 82.8 227 27.8
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 8.3e-14 82.0 225 27.6
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 1.1e-13 81.6 183 28.4
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 3.2e-13 80.1 183 28.4
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 9.2e-13 78.6 187 27.3
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 9.2e-13 78.6 183 26.8
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.6e-12 77.8 185 27.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.6e-12 77.8 185 27.6
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.6e-12 77.8 183 25.7
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 2.1e-12 77.4 184 26.6
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.1e-12 77.4 281 24.6
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 2.7e-12 77.0 185 27.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 2.7e-12 77.0 185 27.6
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 4.6e-12 76.3 185 25.9
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 6.0e-12 75.9 228 25.4
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 7.8e-12 75.5 186 24.2
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 7.8e-12 75.5 183 25.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 7.8e-12 75.5 183 25.1
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.0e-11 75.1 185 26.5
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.3e-11 74.7 186 24.2
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 1.3e-11 74.7 183 25.7
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 1.7e-11 74.3 185 25.9
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.9e-10 70.9 235 25.1
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 1.9e-10 70.9 184 27.7
Pp3c2_13270 Physcomitrium patens HOM05D002933 ORTHO05D007742 2.5e-10 70.5 184 27.7
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 1.2e-09 68.2 186 25.3
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 1.7e-06 57.8 99 30.3
SMO367G0292 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 2.2e-06 57.4 97 29.9
SMO367G0293 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 2.2e-06 57.4 97 29.9


User provided reference genes

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