Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 0.0e+00 1708.3 843 100.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 0.0e+00 1667.1 843 97.4
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 0.0e+00 1601.3 843 93.8
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 0.0e+00 1456.4 852 85.0
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1393.3 868 79.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1390.6 868 79.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1360.1 868 77.3
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 0.0e+00 1308.5 856 76.4
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 5.2e-271 937.9 850 57.8
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.7e-250 869.8 866 53.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 9.0e-247 857.4 854 52.9
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.2e-245 852.8 854 52.6
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 6.2e-240 834.7 857 53.1
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 4.5e-238 828.6 856 52.1
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 9.9e-238 827.4 845 52.2
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-228 797.3 856 51.2
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.4e-228 797.0 860 50.8
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-225 786.6 856 49.4
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 7.4e-225 784.6 850 49.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-224 782.7 850 49.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 4.8e-224 781.9 855 49.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.4e-223 780.4 863 50.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.8e-223 780.0 852 49.4
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.4e-223 779.6 890 49.0
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 4.0e-223 778.9 865 48.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.2e-221 773.1 890 48.4
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.9e-221 771.9 874 49.1
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 6.5e-221 771.5 863 49.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 7.1e-220 768.1 857 49.5
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 3.9e-218 762.3 895 48.6
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-217 760.8 855 48.5
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.7e-216 755.7 861 48.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 4.8e-216 755.4 862 47.9
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 8.2e-216 754.6 860 49.2
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 8.2e-216 754.6 861 48.1
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-215 754.2 850 48.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 7.6e-214 748.0 853 47.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.6e-211 740.3 847 47.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.6e-211 740.3 860 47.8
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.1e-211 740.0 858 47.9
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.9e-211 738.0 862 47.8
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 7.4e-209 731.5 874 46.8
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-207 727.6 882 46.6
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 4.5e-206 722.2 861 46.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.7e-206 721.5 878 46.5
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 3.8e-205 719.2 843 47.7
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 8.5e-205 718.0 874 46.1
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.9e-202 709.1 857 46.7
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.1e-201 707.6 888 46.2
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 5.7e-201 705.3 867 46.5
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 7.4e-201 704.9 862 47.0
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 7.4e-201 704.9 862 47.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 4.1e-199 699.1 900 46.3
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 9.1e-199 698.0 844 46.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.2e-198 697.6 882 47.5
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.5e-198 695.7 923 43.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 3.8e-197 692.6 837 46.7
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 5.0e-197 692.2 883 46.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 7.2e-196 688.3 888 46.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 7.2e-196 688.3 874 46.8
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.7e-195 686.4 889 46.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.1e-195 685.3 962 43.8
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.7e-192 677.2 856 46.0
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.8e-192 675.6 858 45.9
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 6.3e-192 675.2 879 44.3
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.4e-191 674.1 857 45.7
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.8e-191 673.7 851 45.8
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 5.3e-191 672.2 868 45.5
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 7.0e-191 671.8 878 44.4
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.1e-191 671.4 875 44.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.0e-190 670.2 847 45.9
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.3e-189 667.5 839 45.6
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.9e-189 666.4 855 45.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.6e-187 660.6 866 45.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.6e-187 660.6 845 46.5
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 2.7e-187 659.8 867 44.3
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.7e-187 659.8 801 46.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 8.0e-187 658.3 736 48.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.4e-186 657.5 865 43.9
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.7e-186 655.2 851 44.8
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.7e-186 655.2 851 44.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 8.8e-186 654.8 864 42.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.7e-184 650.6 871 44.1
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 3.7e-184 649.4 849 44.5
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.8e-184 649.0 840 46.2
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 9.1e-183 644.8 862 43.2
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 7.7e-182 641.7 859 44.8
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.0e-181 641.3 840 43.7
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.5e-180 636.7 728 47.7
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.6e-179 634.0 857 44.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.6e-179 634.0 862 43.7
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.4e-178 630.9 857 43.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.4e-178 630.9 857 43.5
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.6e-177 626.7 736 46.7
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 7.5e-177 625.2 614 53.4
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 3.8e-173 612.8 805 45.0
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.0e-173 612.5 918 41.4
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.4e-167 593.6 788 41.4
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.2e-166 591.3 920 41.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 9.5e-164 581.6 734 44.8
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 4.4e-161 572.8 874 40.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 9.8e-161 571.6 904 38.8
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 8.3e-160 568.5 859 42.0
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.2e-155 554.7 682 44.9
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.5e-148 530.4 657 46.4
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.4e-144 515.8 684 42.5
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 9.2e-143 511.9 601 47.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 3.1e-138 496.9 774 39.7
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.1e-134 484.2 647 42.8
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.3e-133 481.5 611 44.8
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 3.3e-132 476.9 545 49.9
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.4e-129 466.5 628 44.1
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.5e-124 450.7 876 37.0
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.9e-120 436.4 557 45.2
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.4e-119 434.9 640 40.3
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.0e-113 414.5 497 48.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.3e-100 370.2 542 42.4
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 7.4e-100 369.4 356 51.7
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.1e-95 355.5 549 39.3
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.1e-92 345.5 490 42.9
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 7.4e-92 342.8 557 40.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.2e-91 341.3 652 35.3
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.5e-87 327.8 951 29.1
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 8.8e-85 319.3 449 41.9
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.2e-80 304.7 372 47.8
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 2.1e-78 298.1 1065 26.3
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.7e-67 261.9 214 64.5
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.8e-67 260.4 523 32.7
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 3.8e-64 250.8 645 28.5
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 8.5e-64 249.6 297 46.5
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 2.3e-61 241.5 190 67.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.5e-55 222.2 307 43.0
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 5.2e-53 213.8 166 63.9
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 5.9e-49 200.3 177 59.9
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.6e-48 196.4 201 52.2
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 3.3e-47 194.5 334 38.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.6e-46 192.2 155 65.2
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 6.8e-45 186.8 181 54.7
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 7.5e-44 183.3 181 53.0
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 8.6e-40 169.9 117 68.4
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.1e-37 162.9 194 50.5
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.8e-37 162.2 123 66.7
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 5.2e-37 160.6 149 59.7
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 9.8e-36 156.4 255 40.8
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 3.2e-34 151.4 149 55.0
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.8e-33 146.7 146 56.2
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.7e-32 145.6 264 34.5
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.9e-31 142.1 1108 21.9
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 4.3e-31 141.0 125 54.4
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.8e-30 138.3 125 52.8
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 3.6e-30 137.9 146 54.8
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.1e-29 134.8 135 56.3
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-28 132.1 141 44.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 9.9e-28 129.8 130 54.6
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 9.9e-28 129.8 201 37.8
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.9e-27 128.3 146 49.3
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.9e-27 128.3 450 25.3
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.3e-27 126.7 99 62.6
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.1e-26 126.3 96 64.6
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.9e-24 117.9 90 64.4
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.2e-22 112.8 272 29.4
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 4.7e-22 110.9 245 30.2
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.0e-20 105.5 90 68.9
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.9e-19 101.7 87 57.5
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.4e-18 99.4 255 27.5
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.1e-18 97.1 99 47.5
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 3.3e-15 88.2 63 73.0
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.8e-14 85.1 195 35.4
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 3.6e-14 84.7 305 25.2
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.6e-14 84.7 118 39.8
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.9e-13 80.5 80 56.2
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 6.9e-13 80.5 59 69.5
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.3e-11 76.3 100 51.0
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.1e-10 73.2 59 66.1
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 1.6e-09 69.3 243 28.0
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-08 66.6 64 56.2
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.3e-07 61.2 56 51.8
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.6e-07 60.8 67 46.3
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.3e-06 59.7 49 53.1


User provided reference genes

Program Settings