Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006455.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 9.8e-69 263.5 145 100.0
PGSC0003DMG400001986 Solanum tuberosum HOM05D002366 ORTHO05D002499 1.8e-46 189.5 104 92.3
Oeu048250.1 Olea europaea HOM05D002366 ORTHO05D002499 1.3e-25 120.2 160 46.9
DCAR_027633 Daucus carota HOM05D002366 ORTHO05D002499 1.9e-24 116.3 164 47.0
Cc02_g07950 Coffea canephora HOM05D002366 ORTHO05D002499 2.8e-23 112.5 159 45.3
Dinv26005 Davidia involucrata HOM05D002366 ORTHO05D002499 3.4e-21 105.5 160 43.8
Solyc04g011480.3 Solanum lycopersicum HOM05D002366 ORTHO05D002499 1.3e-20 103.6 158 43.0
CSS0010618 Camellia sinensis var. sinensis HOM05D002366 ORTHO05D002499 2.9e-20 102.4 159 42.8
Sopen04g005660 Solanum pennellii HOM05D002366 ORTHO05D002499 2.9e-20 102.4 158 42.4
SalBow3G2180 Salvia bowleyana HOM05D002366 ORTHO05D002499 3.8e-20 102.1 155 43.9
SalBow6G6566 Salvia bowleyana HOM05D002366 ORTHO05D002499 3.8e-20 102.1 155 43.2
Sopen04g005670 Solanum pennellii HOM05D002366 ORTHO05D002499 8.4e-20 100.9 158 43.7
Cc02_g07930 Coffea canephora HOM05D002366 ORTHO05D002499 1.1e-19 100.5 162 42.6
PGSC0003DMG400027749 Solanum tuberosum HOM05D002366 ORTHO05D002499 1.1e-19 100.5 158 42.4
Solyc04g011490.4 Solanum lycopersicum HOM05D002366 ORTHO05D002499 1.9e-19 99.8 158 43.7
SalBow6G6394 Salvia bowleyana HOM05D002366 ORTHO05D002499 3.2e-19 99.0 155 42.6
GSVIVG01016540001 Vitis vinifera HOM05D002366 ORTHO05D002499 3.2e-19 99.0 152 41.4
DCAR_019173 Daucus carota HOM05D002366 ORTHO05D002499 7.1e-19 97.8 117 47.9
Lalb_Chr10g0091701 Lupinus albus HOM05D002366 ORTHO05D002499 1.2e-18 97.1 162 40.7
Peaxi162Scf00760g00219 Petunia axillaris HOM05D002366 ORTHO05D002499 1.6e-18 96.7 160 40.6
Phvul.008G012300 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 1.6e-18 96.7 144 43.8
SalBow6G5537 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.6e-18 96.7 157 38.9
Dinv31454 Davidia involucrata HOM05D002366 ORTHO05D002499 2.7e-18 95.9 112 49.1
PGSC0003DMG400027748 Solanum tuberosum HOM05D002366 ORTHO05D002499 2.7e-18 95.9 158 41.8
Glyma.02G092500 Glycine max HOM05D002366 ORTHO05D002499 4.6e-18 95.1 149 42.3
GSVIVG01016541001 Vitis vinifera HOM05D002366 ORTHO05D002499 6.0e-18 94.7 157 38.9
Dinv26006 Davidia involucrata HOM05D002366 ORTHO05D002499 1.3e-17 93.6 166 39.2
Nitab4.5_0000687g0160 Nicotiana tabacum HOM05D002366 ORTHO05D002499 1.3e-17 93.6 152 43.4
CAN.G786.13 Capsicum annuum HOM05D002366 ORTHO05D002499 3.9e-17 92.0 157 40.1
arahy.Tifrunner.gnm1.ann1.BG6DLE Arachis hypogaea HOM05D002366 ORTHO05D002499 8.7e-17 90.9 155 40.0
arahy.Tifrunner.gnm1.ann1.CW7JQJ Arachis hypogaea HOM05D002366 ORTHO05D002499 8.7e-17 90.9 155 40.0
Lalb_Chr17g0336171 Lupinus albus HOM05D002366 ORTHO05D002499 1.1e-16 90.5 165 40.6
MSTRG.8245 Avicennia marina HOM05D002366 ORTHO05D002499 1.5e-16 90.1 140 41.4
Sed0023282 Sechium edule HOM05D002366 ORTHO05D002499 1.9e-16 89.7 147 42.9
Ca_07285_v3 Cicer arietinum L. HOM05D002366 ORTHO05D002499 3.3e-16 89.0 153 41.8
Migut.F01504 Erythranthe guttata HOM05D002366 ORTHO05D002499 3.3e-16 89.0 108 44.4
Glyma.02G092600 Glycine max HOM05D002366 ORTHO05D002499 3.3e-16 89.0 150 38.7
Phvul.008G012200 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 3.3e-16 89.0 156 39.1
Cpa.g.sc361.1 Carica papaya HOM05D002366 ORTHO05D002499 4.3e-16 88.6 131 40.5
BcaB06g29095 Brassica carinata HOM05D002366 ORTHO05D002499 7.4e-16 87.8 158 41.1
MELO3C021645.2 Cucumis melo HOM05D002366 ORTHO05D002499 7.4e-16 87.8 149 42.3
BcaC02g07399 Brassica carinata HOM05D002366 ORTHO05D002499 9.7e-16 87.4 158 39.9
Peaxi162Scf00760g00218 Petunia axillaris HOM05D002366 ORTHO05D002499 1.6e-15 86.7 160 36.9
Glyma.18G289800 Glycine max HOM05D002366 ORTHO05D002499 6.3e-15 84.7 147 39.5
VMungo1383G2148 Vigna mungo HOM05D002366 ORTHO05D002499 6.3e-15 84.7 149 39.6
Medtr7g024750 Medicago truncatula HOM05D002366 ORTHO05D002499 8.2e-15 84.3 150 40.7
Carub.0004s2161 Capsella rubella HOM05D002366 ORTHO05D002499 1.1e-14 84.0 128 43.0
Potri.010G204700 Populus trichocarpa HOM05D002366 ORTHO05D002499 1.1e-14 84.0 156 37.8
Thecc.10G043700 Theobroma cacao HOM05D002366 ORTHO05D002499 1.1e-14 84.0 162 37.7
ClCG09G019910 Citrullus lanatus HOM05D002366 ORTHO05D002499 1.8e-14 83.2 172 39.5
CsaV3_5G026540 Cucumis sativus L. HOM05D002366 ORTHO05D002499 1.8e-14 83.2 152 40.8
Glyma.18G289900 Glycine max HOM05D002366 ORTHO05D002499 3.1e-14 82.4 148 38.5
Glyma.18G290100 Glycine max HOM05D002366 ORTHO05D002499 3.1e-14 82.4 148 38.5
TPR.G15520 Trifolium pratense HOM05D002366 ORTHO05D002499 3.1e-14 82.4 149 39.6
A04p30420 Brassica napus HOM05D002366 ORTHO05D002499 5.3e-14 81.6 157 38.2
C04p67400 Brassica napus HOM05D002366 ORTHO05D002499 5.3e-14 81.6 157 38.9
Haze_17057 Corylus avellana HOM05D002366 ORTHO05D002499 5.3e-14 81.6 151 42.4
Carub.0004s2160 Capsella rubella HOM05D002366 ORTHO05D002499 6.9e-14 81.3 153 39.9
TWI38G1308 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 6.9e-14 81.3 112 43.8
Migut.F01502 Erythranthe guttata HOM05D002366 ORTHO05D002499 9.0e-14 80.9 107 42.1
AT2G39518 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 1.2e-13 80.5 163 38.0
Aa31LG5G20080 Aethionema arabicum HOM05D002366 ORTHO05D002499 1.5e-13 80.1 158 39.2
AL4G36940 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 1.5e-13 80.1 160 37.5
Duzib114G1053 Durio zibethinus HOM05D002366 ORTHO05D002499 1.5e-13 80.1 158 36.1
BcaC02g07395 Brassica carinata HOM05D002366 ORTHO05D002499 2.0e-13 79.7 159 39.0
CANSAT56G4267 Cannabis sativa HOM05D002366 ORTHO05D002499 2.0e-13 79.7 145 38.6
Migut.F01505 Erythranthe guttata HOM05D002366 ORTHO05D002499 2.0e-13 79.7 151 39.1
AL4G36950 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 2.6e-13 79.3 158 38.0
Gorai.011G257400 Gossypium raimondii HOM05D002366 ORTHO05D002499 5.9e-13 78.2 116 40.5
Sabra10G0158200 Salix brachista HOM05D002366 ORTHO05D002499 7.7e-13 77.8 166 39.2
VMungo1383G2089 Vigna mungo HOM05D002366 ORTHO05D002499 7.7e-13 77.8 148 35.1
CARHR134410 Cardamine hirsuta HOM05D002366 ORTHO05D002499 1.0e-12 77.4 158 39.2
PGSC0003DMG400035890 Solanum tuberosum HOM05D002366 ORTHO05D002499 1.0e-12 77.4 155 41.9
C04p67410 Brassica napus HOM05D002366 ORTHO05D002499 1.3e-12 77.0 158 39.2
BolC4t28239H Brassica oleracea HOM05D002366 ORTHO05D002499 1.3e-12 77.0 158 39.2
CANSAT56G2475 Cannabis sativa HOM05D002366 ORTHO05D002499 1.3e-12 77.0 145 37.9
MELO3C021643.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.3e-12 77.0 150 38.7
A04p30410 Brassica napus HOM05D002366 ORTHO05D002499 2.2e-12 76.3 156 39.1
CANSAT56G1523 Cannabis sativa HOM05D002366 ORTHO05D002499 2.2e-12 76.3 140 40.0
AT2G39530 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 2.9e-12 75.9 147 39.5
Eucgr.G02924 Eucalyptus grandis HOM05D002366 ORTHO05D002499 2.9e-12 75.9 154 37.7
TPR.G15505 Trifolium pratense HOM05D002366 ORTHO05D002499 3.8e-12 75.5 118 42.4
Dinv20493 Davidia involucrata HOM05D002366 ORTHO05D002499 6.5e-12 74.7 126 38.1
Dinv20549 Davidia involucrata HOM05D002366 ORTHO05D002499 6.5e-12 74.7 126 38.1
BraA04t18467Z Brassica rapa HOM05D002366 ORTHO05D002499 8.5e-12 74.3 156 35.9
CANSAT56G3432 Cannabis sativa HOM05D002366 ORTHO05D002499 1.1e-11 73.9 140 39.3
Thhalv10017305m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 1.1e-11 73.9 167 35.9
Medtr7g024730 Medicago truncatula HOM05D002366 ORTHO05D002499 1.1e-11 73.9 119 39.5
Psat3g179160 Pisum sativum HOM05D002366 ORTHO05D002499 1.4e-11 73.6 118 40.7
CsaV3_5G026570 Cucumis sativus L. HOM05D002366 ORTHO05D002499 1.9e-11 73.2 150 36.0
Thhalv10017310m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 1.9e-11 73.2 152 37.5
Prupe.2G233700 Prunus persica HOM05D002366 ORTHO05D002499 1.9e-11 73.2 154 37.7
Gohir.D10G226600 Gossypium hirsutum HOM05D002366 ORTHO05D002499 2.5e-11 72.8 163 34.4
Prupe.2G233800 Prunus persica HOM05D002366 ORTHO05D002499 2.5e-11 72.8 154 40.3
Sp4g21820 Schrenkiella parvula HOM05D002366 ORTHO05D002499 2.5e-11 72.8 172 36.0
BcaC02g12081 Brassica carinata HOM05D002366 ORTHO05D002499 3.2e-11 72.4 155 36.8
C04p08120 Brassica napus HOM05D002366 ORTHO05D002499 3.2e-11 72.4 152 37.5
BolC4t22422H Brassica oleracea HOM05D002366 ORTHO05D002499 3.2e-11 72.4 152 37.5
Sabra10G0158300 Salix brachista HOM05D002366 ORTHO05D002499 3.2e-11 72.4 152 37.5
SalBow6G2650 Salvia bowleyana HOM05D002366 ORTHO05D002499 3.2e-11 72.4 72 48.6
Lj1g0005309 Lotus japonicus HOM05D002366 ORTHO05D002499 4.2e-11 72.0 150 38.7
Prupe.2G233900 Prunus persica HOM05D002366 ORTHO05D002499 5.5e-11 71.6 153 39.2
SalBow3G4426 Salvia bowleyana HOM05D002366 ORTHO05D002499 5.5e-11 71.6 156 39.7
Sed0020714 Sechium edule HOM05D002366 ORTHO05D002499 5.5e-11 71.6 152 34.9
Solyc05g055150.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 5.5e-11 71.6 118 42.4
Gohir.D10G226300 Gossypium hirsutum HOM05D002366 ORTHO05D002499 7.2e-11 71.2 163 33.7
Lj1g0007186 Lotus japonicus HOM05D002366 ORTHO05D002499 7.2e-11 71.2 158 37.3
A05p06860 Brassica napus HOM05D002366 ORTHO05D002499 9.4e-11 70.9 117 40.2
BraA05t19651Z Brassica rapa HOM05D002366 ORTHO05D002499 9.4e-11 70.9 117 40.2
Manes.17G090200 Manihot esculenta HOM05D002366 ORTHO05D002499 9.4e-11 70.9 176 33.0
THA.LOC104810173 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 9.4e-11 70.9 160 36.9
TPR.G18306 Trifolium pratense HOM05D002366 ORTHO05D002499 9.4e-11 70.9 112 39.3
BcaB02g09112 Brassica carinata HOM05D002366 ORTHO05D002499 1.2e-10 70.5 155 36.1
CDE07G1817 Ceratophyllum demersum HOM05D002366 ORTHO05D002499 2.7e-10 69.3 158 33.5
Nitab4.5_0000687g0190 Nicotiana tabacum HOM05D002366 ORTHO05D002499 6.1e-10 68.2 109 42.2
Thecc.03G067200 Theobroma cacao HOM05D002366 ORTHO05D002499 6.1e-10 68.2 159 32.1
FAN01G2158 Fragaria x ananassa HOM05D002366 ORTHO05D002499 7.9e-10 67.8 154 36.4
SalBow3G2728 Salvia bowleyana HOM05D002366 ORTHO05D002499 7.9e-10 67.8 142 36.6
BolC4t28238H Brassica oleracea HOM05D002366 ORTHO05D002499 1.8e-09 66.6 158 34.2
DCAR_023535 Daucus carota HOM05D002366 ORTHO05D002499 1.8e-09 66.6 169 32.5
FAN03G1080 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.8e-09 66.6 154 35.7
Peaxi162Scf00519g00315 Petunia axillaris HOM05D002366 ORTHO05D002499 1.8e-09 66.6 111 41.4
FvH4_7g22200 Fragaria vesca HOM05D002366 ORTHO05D002499 2.3e-09 66.2 154 35.7
FAN06G1701 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.3e-09 66.2 154 35.7
Oeu042016.1 Olea europaea HOM05D002366 ORTHO05D002499 2.3e-09 66.2 144 31.2
Dinv20495 Davidia involucrata HOM05D002366 ORTHO05D002499 3.0e-09 65.9 191 30.9
Gohir.A10G217500 Gossypium hirsutum HOM05D002366 ORTHO05D002499 3.0e-09 65.9 161 31.7
RcHm_v2.0_Chr1g0366551 Rosa chinensis HOM05D002366 ORTHO05D002499 3.0e-09 65.9 154 37.0
BcaB06g29094 Brassica carinata HOM05D002366 ORTHO05D002499 1.1e-08 63.9 171 33.3
Peaxi162Scf00033g02314 Petunia axillaris HOM05D002366 ORTHO05D014666 1.1e-08 63.9 157 31.8
CANSAT56G4227 Cannabis sativa HOM05D002366 ORTHO05D002499 1.5e-08 63.5 158 35.4
Sp4g21830 Schrenkiella parvula HOM05D002366 ORTHO05D002499 2.0e-08 63.2 158 34.2
Lsat_1_v5_gn_8_34180 Lactuca sativa HOM05D002366 ORTHO05D002499 2.5e-08 62.8 177 31.6
TPR.G18296 Trifolium pratense HOM05D002366 ORTHO05D002499 2.5e-08 62.8 153 32.0
Sopen03g031880 Solanum pennellii HOM05D002366 ORTHO05D002499 3.3e-08 62.4 118 32.2
Actinidia28014 Actinidia chinensis HOM05D002366 ORTHO05D002499 4.3e-08 62.0 150 32.0
CANSAT56G3459 Cannabis sativa HOM05D002366 ORTHO05D002499 4.3e-08 62.0 157 35.0
Dinv15677 Davidia involucrata HOM05D002366 ORTHO05D002499 4.3e-08 62.0 147 30.6
Cc08_g03880 Coffea canephora HOM05D002366 ORTHO05D002499 5.7e-08 61.6 108 36.1
Nitab4.5_0001822g0030 Nicotiana tabacum HOM05D002366 ORTHO05D014666 5.7e-08 61.6 154 36.4
Dinv20547 Davidia involucrata HOM05D002366 ORTHO05D002499 9.7e-08 60.8 202 29.2
Nitab4.5_0005964g0040 Nicotiana tabacum HOM05D002366 ORTHO05D002499 9.7e-08 60.8 160 35.6
Sed0022735 Sechium edule HOM05D002366 ORTHO05D002499 9.7e-08 60.8 153 32.0
SalBow2G2007 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.3e-07 60.5 174 32.2
ClCG09G019900 Citrullus lanatus HOM05D002366 ORTHO05D002499 1.7e-07 60.1 116 34.5
Migut.I00570 Erythranthe guttata HOM05D002366 ORTHO05D002499 3.7e-07 58.9 151 29.1
Sc06g0002620 Simmondsia chinensis HOM05D002366 ORTHO05D002499 3.7e-07 58.9 146 37.0
TWI81G0381 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 1.1e-06 57.4 162 31.5
Oeu019149.1 Olea europaea HOM05D002366 ORTHO05D002499 1.4e-06 57.0 160 31.2
Oeu040913.1 Olea europaea HOM05D002366 ORTHO05D002499 1.8e-06 56.6 137 31.4
Peaxi162Scf00760g00017 Petunia axillaris HOM05D002366 ORTHO05D002499 1.8e-06 56.6 104 36.5
THA.LOC104824587 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 1.8e-06 56.6 160 35.0
Atru.chr11.990 Acer truncatum HOM05D002366 ORTHO05D002499 2.4e-06 56.2 160 29.4
BcaC02g07396 Brassica carinata HOM05D002366 ORTHO05D002499 2.4e-06 56.2 145 32.4
Solyc01g005040.3 Solanum lycopersicum HOM05D002366 ORTHO05D014666 2.4e-06 56.2 153 31.4
TWI74G0850 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 3.1e-06 55.8 171 28.7
Atru.chr9.1589 Acer truncatum HOM05D002366 ORTHO05D002499 4.1e-06 55.5 167 27.5
Ciclev10033896m.g Citrus clementina HOM05D002366 ORTHO05D002499 4.1e-06 55.5 144 37.5
RcHm_v2.0_Chr1g0366601 Rosa chinensis HOM05D002366 ORTHO05D029503 4.1e-06 55.5 162 30.2
Cfa020652 Carpinus fangiana HOM05D002366 ORTHO05D002499 6.9e-06 54.7 146 33.6
Haze_17054 Corylus avellana HOM05D002366 ORTHO05D002499 6.9e-06 54.7 157 36.9
Migut.E00564 Erythranthe guttata HOM05D002366 ORTHO05D002499 6.9e-06 54.7 153 30.1
TWI60G0723 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 6.9e-06 54.7 161 30.4


User provided reference genes

Program Settings