Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 0.0e+00 1661.4 847 100.0
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1624.4 841 98.6
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1421.8 844 85.5
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1410.6 844 84.8
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1309.3 841 81.0
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 9.6e-265 917.1 843 59.4
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 9.9e-262 907.1 868 58.3
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 3.8e-261 905.2 847 58.9
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 1.4e-260 903.3 883 57.3
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 7.8e-259 897.5 924 55.1
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 9.6e-257 890.6 848 58.3
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 1.2e-254 883.6 854 55.7
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 7.6e-254 880.9 854 57.8
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 7.1e-252 874.4 855 56.5
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 6.0e-251 871.3 844 57.1
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 6.0e-251 871.3 847 57.6
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 2.3e-250 869.4 852 56.7
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 7.4e-249 864.4 851 57.9
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 2.8e-248 862.4 853 56.2
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 1.1e-247 860.5 848 57.4
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 1.4e-244 850.1 841 56.1
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 2.7e-243 845.9 838 55.7
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 3.5e-243 845.5 842 57.5
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 7.9e-243 844.3 842 57.0
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 4.3e-241 838.6 843 55.5
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 2.8e-240 835.9 842 57.0
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 8.2e-240 834.3 839 56.0
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 3.4e-238 828.9 844 55.9
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 8.4e-237 824.3 848 55.2
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.5e-235 818.9 841 54.2
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 7.4e-233 811.2 841 54.5
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.2e-227 793.9 705 61.4
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 8.8e-226 787.7 943 50.8
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 1.9e-225 786.6 855 53.5
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 8.2e-224 781.2 881 52.2
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 5.3e-223 778.5 871 52.4
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 6.9e-223 778.1 822 53.5
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 1.2e-222 777.3 845 53.7
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 3.4e-222 775.8 847 51.6
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 4.5e-222 775.4 842 53.1
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 5.9e-222 775.0 854 52.6
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.3e-221 773.9 848 51.9
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 3.8e-221 772.3 852 52.6
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 5.0e-221 771.9 845 51.7
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 6.5e-221 771.5 840 51.9
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 2.1e-219 766.5 845 52.0
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 2.7e-219 766.1 846 52.6
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 4.8e-216 755.4 821 52.1
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.1e-215 754.2 851 49.8
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 6.5e-213 745.0 822 52.4
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 1.4e-212 743.8 863 50.4
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 1.9e-212 743.4 842 50.8
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 4.7e-211 738.8 843 49.5
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 1.4e-210 737.3 844 49.9
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 1.1e-207 727.6 841 50.3
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 4.5e-206 722.2 852 50.0
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 4.5e-206 722.2 851 50.2
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 7.7e-206 721.5 845 49.3
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 1.0e-205 721.1 843 50.5
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.7e-205 720.3 837 49.2
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.5e-204 716.5 845 51.4
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 8.0e-203 711.4 897 46.8
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 4.0e-202 709.1 873 48.2
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 5.7e-201 705.3 849 49.8
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.6e-198 697.2 736 55.3
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 2.7e-198 696.4 846 47.6
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 1.0e-197 694.5 843 47.9
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.7e-197 693.7 856 48.4
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 5.0e-197 692.2 856 48.0
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 1.5e-196 690.6 856 48.2
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 7.2e-196 688.3 859 47.1
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 9.4e-196 688.0 856 48.0
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 2.7e-195 686.4 843 47.6
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 8.0e-195 684.9 844 47.6
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 8.0e-195 684.9 841 49.5
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 5.2e-194 682.2 865 47.5
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 2.0e-193 680.2 846 47.8
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.6e-193 679.9 856 47.8
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 5.7e-193 678.7 845 48.5
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 2.8e-192 676.4 844 46.9
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 3.1e-191 672.9 655 58.3
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 9.1e-191 671.4 858 46.9
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 1.2e-190 671.0 855 47.0
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 2.0e-190 670.2 859 46.9
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 1.1e-188 664.5 846 46.7
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 5.5e-188 662.1 838 47.6
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 7.2e-188 661.8 858 46.6
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 7.2e-188 661.8 858 46.6
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 7.2e-188 661.8 858 46.6
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 2.8e-187 659.8 855 46.2
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 1.5e-185 654.1 844 46.1
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 2.2e-184 650.2 853 44.8
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.8e-183 647.1 849 46.6
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 1.5e-180 637.5 842 45.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 1.5e-177 627.5 735 49.8
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 3.6e-171 606.3 861 44.0
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.6e-171 606.3 470 66.0
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 3.1e-170 603.2 842 43.7
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 5.8e-169 599.0 516 59.5
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 2.9e-168 596.7 865 44.5
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.6e-165 585.1 527 60.2
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 5.8e-145 519.2 515 52.2
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.0e-141 508.4 361 72.0
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.1e-135 485.7 552 52.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.9e-132 477.6 360 65.6
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.1e-130 471.9 380 64.5
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 6.9e-130 469.2 1076 33.5
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.4e-114 417.5 418 52.2
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 8.5e-104 382.5 565 40.7
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 7.2e-103 379.4 527 40.0
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 8.8e-101 372.5 532 41.5
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.0e-92 344.7 439 44.4
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.8e-83 313.5 326 50.3
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.4e-69 268.9 351 44.4
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.7e-67 261.9 405 44.0
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 7.0e-66 256.5 392 36.5
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.1e-47 196.1 412 38.8
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 9.9e-44 183.0 293 40.6
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.2e-41 176.0 199 52.3
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.1e-39 169.5 121 69.4
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 4.0e-37 161.0 504 26.4
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 9.9e-36 156.4 89 88.8
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.7e-35 155.6 317 36.0
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 1.0e-32 146.4 420 28.3
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.7e-24 119.0 210 34.3
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.1e-21 108.2 155 45.2
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 7.1e-18 97.1 434 25.6
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.2e-17 96.3 97 50.5
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.1e-15 89.7 160 36.2
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 9.6e-15 86.7 72 56.9


User provided reference genes

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