Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 4.2e-150 534.6 266 100.0
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 8.7e-148 526.9 266 98.1
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 5.9e-144 514.2 266 95.9
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 4.7e-133 478.0 266 88.3
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 1.8e-129 466.1 264 88.6
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 1.8e-124 449.5 334 70.4
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 4.4e-115 418.3 226 90.7
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 1.2e-112 410.2 245 80.4
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.3e-108 396.0 248 78.2
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 4.0e-108 395.2 247 77.7
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 1.5e-107 393.3 250 78.0
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 1.5e-107 393.3 249 77.1
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 3.4e-107 392.1 247 76.5
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 3.4e-107 392.1 250 76.0
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 4.4e-107 391.7 247 77.3
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 9.8e-107 390.6 250 74.4
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 1.3e-106 390.2 244 77.5
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 3.7e-106 388.7 247 76.1
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 4.9e-106 388.3 247 74.9
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 6.3e-106 387.9 247 76.1
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 1.2e-104 383.6 249 74.7
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 1.6e-104 383.3 228 80.7
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 5.9e-104 381.3 229 79.9
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 1.7e-103 379.8 255 71.4
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.3e-103 379.4 246 75.2
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 2.3e-103 379.4 245 75.1
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 2.9e-103 379.0 247 74.5
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 5.0e-103 378.3 246 76.4
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 6.6e-103 377.9 246 76.4
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 6.6e-103 377.9 249 73.9
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 8.6e-103 377.5 249 75.1
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 1.9e-102 376.3 253 73.9
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 5.6e-102 374.8 254 71.3
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 9.5e-102 374.0 258 72.9
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 1.2e-101 373.6 252 72.6
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 1.2e-101 373.6 252 72.6
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 1.2e-101 373.6 249 74.7
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 1.2e-101 373.6 234 76.9
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 2.8e-101 372.5 254 72.0
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 3.6e-101 372.1 247 72.5
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 1.4e-100 370.2 253 71.1
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 1.8e-100 369.8 245 70.6
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 4.0e-100 368.6 246 73.2
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 4.0e-100 368.6 246 73.2
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 4.0e-100 368.6 246 73.2
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 8.9e-100 367.5 231 76.2
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 1.2e-99 367.1 254 68.9
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 1.5e-99 366.7 228 75.9
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.5e-99 366.7 244 72.5
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 1.5e-99 366.7 273 68.1
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 2.0e-99 366.3 228 76.8
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 2.6e-99 365.9 248 73.0
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.6e-99 365.9 253 70.8
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 2.6e-99 365.9 255 70.6
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 2.6e-99 365.9 247 71.7
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 7.5e-99 364.4 248 72.2
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 7.5e-99 364.4 239 73.6
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 2.2e-98 362.8 244 73.0
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 3.7e-98 362.1 239 73.2
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 4.9e-98 361.7 238 71.8
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 6.4e-98 361.3 242 71.9
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 1.8e-97 359.8 248 69.8
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 1.8e-97 359.8 248 70.6
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 3.2e-97 359.0 274 66.1
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 9.2e-97 357.5 245 72.2
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 9.2e-97 357.5 228 75.9
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 3.5e-96 355.5 256 68.0
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 3.5e-96 355.5 242 71.1
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 4.6e-96 355.1 244 70.9
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 7.8e-96 354.4 241 71.8
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 1.0e-95 354.0 257 68.1
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 2.3e-95 352.8 241 71.4
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 3.0e-95 352.4 258 66.7
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 3.0e-95 352.4 219 78.5
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 3.9e-95 352.1 243 70.4
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 3.9e-95 352.1 241 71.4
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 8.6e-95 350.9 248 69.8
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 8.6e-95 350.9 259 67.6
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 4.3e-94 348.6 245 68.6
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 5.6e-94 348.2 244 69.7
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 5.6e-94 348.2 244 69.7
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 7.3e-94 347.8 208 80.8
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 9.5e-94 347.4 266 65.8
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 3.6e-93 345.5 241 69.7
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 3.6e-93 345.5 229 70.7
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 6.2e-93 344.7 248 69.8
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 8.0e-93 344.4 209 79.9
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 2.3e-92 342.8 230 73.9
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 5.2e-92 341.7 208 78.4
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 6.8e-92 341.3 323 57.3
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 5.8e-91 338.2 249 70.3
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 3.7e-90 335.5 236 69.5
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 1.9e-89 333.2 232 69.8
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 7.0e-89 331.3 212 76.4
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 9.2e-89 330.9 248 65.7
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 1.7e-87 326.6 208 76.0
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 2.1e-85 319.7 211 72.5
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.8e-84 316.6 199 77.9
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 3.7e-82 308.9 216 69.0
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 2.1e-80 303.1 198 72.7
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 2.6e-75 286.2 197 69.5
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 1.3e-71 273.9 306 50.3
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 4.3e-70 268.9 166 80.1
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 6.2e-69 265.0 223 60.1
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 2.2e-66 256.5 230 54.3
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 2.9e-66 256.1 174 72.4
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 1.1e-60 237.7 240 50.8
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 3.4e-59 232.6 230 51.7
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 7.1e-57 224.9 156 69.2
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 6.9e-52 208.4 229 48.9
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 1.9e-49 200.3 133 71.4
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 5.6e-46 188.7 113 77.9
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 4.5e-43 179.1 143 63.6
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 5.8e-43 178.7 143 63.6
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 2.2e-42 176.8 143 62.9
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 6.5e-42 175.3 135 63.7
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 1.8e-39 167.2 114 70.2
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 2.2e-37 160.2 96 80.2
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.8e-36 157.1 172 48.3
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 2.5e-33 146.7 121 59.5
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 8.8e-31 138.3 79 78.5
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 1.1e-30 137.9 95 71.6
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 2.2e-26 123.6 86 65.1
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 5.1e-23 112.5 111 57.7
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 2.5e-17 93.6 47 83.0
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 2.7e-16 90.1 171 32.2
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 1.1e-09 68.2 111 40.5
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 9.4e-09 65.1 111 39.6
Gohir.A03G127900 Gossypium hirsutum HOM05D005955 ORTHO05D033925 6.7e-07 58.9 39 69.2


User provided reference genes

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