Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 0.0e+00 1923.3 964 100.0
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 0.0e+00 1888.6 964 98.3
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 0.0e+00 1377.8 917 78.4
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 0.0e+00 1300.4 753 88.4
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 0.0e+00 1166.8 830 75.2
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 4.2e-293 1011.5 971 55.1
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 1.1e-285 986.9 1009 52.7
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 4.4e-274 948.3 912 55.9
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.1e-272 943.7 948 53.3
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 4.7e-268 928.3 966 52.4
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 2.9e-265 919.1 972 51.1
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 9.2e-264 914.1 946 52.1
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 4.6e-263 911.8 972 50.7
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.2e-260 903.7 976 51.6
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.3e-254 883.6 972 48.9
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 5.1e-254 881.7 975 48.7
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 2.5e-253 879.4 973 48.6
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 9.6e-253 877.5 974 49.9
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.8e-251 873.2 981 49.6
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 1.2e-250 870.5 976 49.0
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.0e-250 869.8 980 48.8
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 3.2e-248 862.4 975 48.7
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.2e-247 860.5 976 49.1
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 6.0e-247 858.2 1007 48.0
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 8.7e-246 854.4 1013 47.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 1.1e-245 854.0 962 49.7
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 1.5e-245 853.6 1002 48.5
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 6.2e-244 848.2 981 49.3
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 4.0e-243 845.5 917 51.0
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 6.4e-241 838.2 969 46.9
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 1.6e-239 833.6 942 48.3
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 4.3e-237 825.5 1041 46.0
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 5.6e-237 825.1 1016 45.3
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 6.2e-236 821.6 984 48.2
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 1.2e-234 817.4 975 46.9
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 6.4e-233 811.6 947 46.4
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.4e-232 810.4 964 45.5
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 1.8e-230 803.5 947 45.9
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 5.1e-230 802.0 966 45.5
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 6.7e-230 801.6 838 51.7
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 3.1e-227 792.7 909 46.1
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 2.6e-226 789.6 993 43.3
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 4.9e-225 785.4 854 51.4
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.4e-224 783.9 912 45.3
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 1.9e-224 783.5 915 46.6
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 2.5e-224 783.1 955 45.4
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 4.3e-221 772.3 1008 45.6
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 4.3e-221 772.3 967 45.2
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.1e-219 767.7 969 45.5
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 9.0e-219 764.6 860 49.0
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 1.3e-217 760.8 966 44.9
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 6.9e-211 738.4 961 44.0
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 3.2e-208 729.6 801 51.3
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 1.3e-201 707.6 759 50.7
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 3.8e-201 706.1 892 43.5
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 4.2e-192 676.0 790 46.5
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 6.7e-190 668.7 802 47.4
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.6e-186 657.5 505 71.7
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 4.5e-186 656.0 655 54.2
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 6.5e-185 652.1 890 43.4
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 4.4e-181 639.4 751 47.4
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 7.5e-181 638.6 968 42.1
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 4.8e-180 636.0 942 39.6
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 2.0e-178 630.6 674 50.4
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 2.5e-176 623.6 849 43.0
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 4.7e-175 619.4 655 52.4
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 3.4e-173 613.2 931 39.4
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 6.1e-167 592.4 854 41.6
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 2.0e-165 587.4 840 41.7
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.8e-159 567.0 657 47.6
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 1.1e-142 511.9 482 53.9
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 7.6e-141 505.8 983 36.1
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 9.2e-139 498.8 533 51.8
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 4.2e-131 473.4 416 57.7
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 1.8e-126 458.0 478 49.8
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 2.1e-122 444.5 784 37.1
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 1.4e-118 431.8 490 48.2
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 2.1e-111 407.9 419 50.6
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 4.9e-108 396.7 340 59.1
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 5.7e-104 383.3 629 40.1
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 9.7e-96 355.9 282 60.6
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 5.5e-91 340.1 171 97.7
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 3.7e-87 327.4 816 31.6
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 5.0e-84 317.0 936 29.7
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 3.3e-80 304.3 363 44.4
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 7.2e-75 286.6 521 37.0
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 1.2e-74 285.8 942 25.6
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 1.5e-72 278.9 245 59.2
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 9.1e-70 269.6 914 27.0
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 2.6e-64 251.5 323 48.0
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 5.0e-60 237.3 143 83.9
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.4e-57 229.2 937 25.0
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.3e-55 220.3 123 87.8
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.7e-52 212.2 172 60.5
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 1.9e-51 208.8 247 44.5
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 2.6e-48 198.4 196 53.1
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 3.7e-47 194.5 182 51.1
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 3.3e-43 181.4 203 49.8
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 3.1e-41 174.9 214 43.9
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.7e-31 142.5 175 49.1
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 5.4e-30 137.5 156 44.2
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 9.2e-30 136.7 189 43.9
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 7.3e-27 127.1 269 32.3
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 4.0e-25 121.3 137 44.5
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 8.9e-25 120.2 105 51.4
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 9.9e-24 116.7 97 58.8
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.7e-23 115.9 164 37.8
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.2e-22 111.7 116 46.6
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 5.4e-22 110.9 158 37.3
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 8.7e-20 103.6 95 50.5
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 2.5e-19 102.1 76 61.8
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.7e-13 82.0 102 39.2
Ca_04901_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 2.1e-10 72.4 552 24.5
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.4e-09 69.7 65 50.8
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.4e-09 68.9 128 32.0
arahy.Tifrunner.gnm1.ann1.P2NKR4 Arachis hypogaea HOM05D001219 ORTHO05D001017 2.4e-09 68.9 456 24.1
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 3.1e-09 68.6 75 41.3
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.3e-09 67.8 53 58.5
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 2.0e-08 65.9 227 25.6
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 3.4e-08 65.1 86 39.5
Lj3g0021602 Lotus japonicus HOM05D001219 ORTHO05D001017 1.3e-07 63.2 463 22.0
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 8.4e-07 60.5 515 21.9
CAN.G962.8 Capsicum annuum HOM05D003632 ORTHO05D001064 1.1e-06 60.1 64 57.8
Psat7g041280 Pisum sativum HOM05D001219 ORTHO05D001017 1.1e-06 60.1 547 22.9
RhsimUnG0244100 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.9e-06 59.3 189 23.3
TPR.G15726 Trifolium pratense HOM05D001219 ORTHO05D001017 1.9e-06 59.3 204 26.0
Mapoly0020s0117 Marchantia polymorpha HOM05D018674 ORTHO05D020861 2.4e-06 58.9 425 22.8
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 7.1e-06 57.4 45 55.6


User provided reference genes

Program Settings