Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.8e-156 555.8 265 100.0
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 1.1e-153 546.6 265 98.1
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.3e-148 528.9 265 94.7
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.7e-141 505.4 265 89.8
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-140 503.4 265 90.6
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.2e-134 481.9 265 85.7
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.2e-134 481.5 263 87.5
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.5e-131 472.2 265 84.9
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.0e-128 462.6 249 88.4
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 3.6e-125 451.8 267 79.8
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.3e-113 411.4 265 77.4
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 9.7e-107 390.6 201 92.0
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.4e-100 370.2 309 64.1
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.7e-90 335.5 254 65.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 8.3e-90 334.3 265 61.1
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.7e-87 326.6 265 60.4
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.9e-86 323.2 265 59.6
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 3.3e-86 322.4 266 60.2
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 5.6e-86 321.6 265 57.4
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 9.8e-83 310.8 254 57.9
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.1e-81 307.4 265 57.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.4e-81 306.2 256 58.2
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 7.8e-80 301.2 263 55.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.7e-79 300.1 254 56.3
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 3.3e-78 295.8 265 54.3
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.2e-77 293.9 252 57.1
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.8e-77 292.7 269 54.3
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.8e-76 290.0 256 53.1
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.6e-75 286.2 266 54.1
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.6e-75 286.2 263 52.5
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 2.6e-75 286.2 271 50.9
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 9.8e-75 284.3 268 53.0
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.7e-74 283.5 269 52.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.7e-74 283.5 265 53.2
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 4.9e-74 282.0 254 55.1
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.2e-73 279.3 253 54.9
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.6e-72 276.9 272 53.3
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.1e-72 276.6 267 53.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 3.5e-72 275.8 272 54.0
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 3.5e-72 275.8 257 54.9
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.3e-71 273.1 267 54.3
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 3.9e-71 272.3 266 52.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.9e-71 272.3 267 54.7
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 3.9e-71 272.3 270 53.3
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.6e-70 268.5 264 50.4
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.8e-69 266.2 265 49.8
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 6.2e-69 265.0 273 51.6
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.4e-68 263.8 264 48.5
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.3e-68 263.1 268 50.7
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.1e-68 262.7 225 54.2
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 3.1e-68 262.7 264 48.5
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 6.8e-68 261.5 263 49.8
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 4.4e-67 258.8 257 50.2
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 9.9e-67 257.7 267 52.8
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.7e-66 255.8 267 49.1
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 4.9e-66 255.4 253 53.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 6.4e-66 255.0 269 48.7
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.1e-65 254.2 270 47.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.9e-65 253.4 234 53.4
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.2e-64 250.8 267 52.1
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 1.6e-64 250.4 251 51.8
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.6e-64 250.4 265 47.2
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 3.5e-64 249.2 262 51.1
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 6.0e-64 248.4 261 51.0
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.0e-64 248.4 251 51.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.7e-63 246.9 256 48.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.3e-63 246.5 270 46.3
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.3e-63 246.5 219 52.1
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 3.9e-63 245.7 247 49.4
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.5e-62 243.8 269 46.5
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.5e-62 243.0 269 49.8
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 3.3e-62 242.7 255 50.2
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 7.3e-62 241.5 265 48.7
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 7.3e-62 241.5 268 46.6
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 2.1e-61 240.0 265 44.5
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 2.8e-61 239.6 265 45.3
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 2.8e-61 239.6 265 45.3
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 2.8e-61 239.6 265 45.3
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.8e-61 239.6 268 50.0
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 2.8e-61 239.6 270 45.9
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 6.2e-61 238.4 268 49.3
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 6.2e-61 238.4 240 49.6
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 8.1e-61 238.0 271 48.7
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 8.1e-61 238.0 192 59.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.1e-60 237.7 271 45.4
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.8e-60 236.9 269 48.7
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 3.1e-60 236.1 266 45.9
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.2e-60 235.3 266 44.4
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.9e-60 234.6 199 55.8
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-59 233.8 267 44.9
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 2.0e-59 233.4 267 44.9
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 3.4e-59 232.6 253 46.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 7.6e-59 231.5 265 47.5
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 9.9e-59 231.1 256 48.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.3e-58 230.7 229 49.8
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.7e-58 230.3 212 55.7
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.9e-58 229.6 266 44.0
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.9e-58 229.6 222 50.5
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 3.8e-58 229.2 252 47.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 4.9e-58 228.8 254 45.7
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 4.9e-58 228.8 255 46.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 8.4e-58 228.0 237 50.2
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.1e-57 227.6 274 46.4
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.4e-57 227.3 255 47.1
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.4e-57 227.3 267 42.7
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.4e-57 227.3 267 42.7
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.4e-57 226.5 314 42.7
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 4.2e-57 225.7 258 46.9
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.1e-57 224.9 274 42.7
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 9.2e-57 224.6 287 41.1
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.6e-56 223.8 244 47.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 2.1e-56 223.4 267 42.3
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 2.1e-56 223.4 267 42.3
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.1e-56 223.4 214 52.8
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 3.5e-56 222.6 211 48.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 8.7e-55 218.0 273 42.9
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.1e-54 217.6 249 46.6
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.9e-54 216.9 253 43.5
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.5e-54 216.5 194 60.3
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.3e-54 216.1 270 43.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 5.6e-54 215.3 269 43.9
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-53 213.8 211 48.3
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.6e-53 212.6 214 47.7
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.6e-53 212.6 228 49.1
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-52 211.1 219 45.7
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.4e-51 206.1 210 48.6
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 3.4e-51 206.1 274 46.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.4e-51 206.1 265 46.0
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.2e-50 203.4 273 45.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.9e-50 203.0 265 45.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 6.4e-50 201.8 214 47.7
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-49 201.1 254 45.7
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 5.4e-49 198.7 288 39.6
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.4e-49 198.7 288 38.9
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 9.3e-49 198.0 263 43.3
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 2.7e-48 196.4 241 44.8
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.5e-48 196.1 272 39.0
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.0e-48 195.3 224 46.4
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.3e-47 194.1 265 43.4
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.7e-47 193.7 171 54.4
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.6e-46 188.7 289 37.4
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 6.9e-44 181.8 178 49.4
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.5e-43 180.6 85 96.5
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 3.4e-43 179.5 180 50.0
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 9.9e-43 177.9 87 95.4
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.7e-42 177.2 274 38.3
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-40 169.9 163 49.7
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.6e-40 169.1 265 39.2
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.0e-40 168.7 284 35.6
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.3e-39 167.5 221 41.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.5e-38 164.1 254 39.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 9.6e-38 161.4 221 38.0
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 4.8e-37 159.1 189 43.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 8.1e-37 158.3 302 33.4
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 8.1e-37 158.3 235 40.0
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.4e-33 147.5 239 38.1
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 4.2e-33 146.0 165 41.2
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.1e-32 143.7 153 48.4
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 3.5e-32 142.9 132 56.8
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.5e-30 137.5 131 53.4
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.5e-30 136.7 227 37.9
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 3.3e-30 136.3 240 37.1
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.3e-30 136.0 179 41.9
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 4.3e-30 136.0 318 28.6
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.1e-28 131.3 225 34.2
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 4.5e-27 125.9 231 39.8
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.0e-26 122.5 121 54.5
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.4e-25 120.9 101 58.4
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.5e-25 119.0 228 33.3
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 9.3e-25 118.2 265 29.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-23 114.8 264 29.5
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.0e-23 114.8 81 64.2
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 8.2e-21 105.1 265 30.2
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 8.2e-21 105.1 173 35.8
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 2.3e-15 87.0 102 42.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-14 84.7 110 45.5
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.1e-14 84.7 78 56.4
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.2e-13 80.5 93 41.9
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-12 77.8 148 32.4
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.4e-12 77.8 47 78.7
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.8e-10 69.7 129 36.4
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 9.4e-09 65.1 43 60.5
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 3.9e-07 59.7 45 57.8
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.9e-07 59.7 61 47.5


User provided reference genes

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