Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g076995.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 8.1e-149 530.4 273 100.0
Sopen10g028680 Solanum pennellii HOM05D002005 ORTHO05D003757 3.2e-137 491.9 257 97.7
PGSC0003DMG400019177 Solanum tuberosum HOM05D002005 ORTHO05D003757 2.0e-118 429.5 269 86.2
Solyc10g076650.3 Solanum lycopersicum HOM05D002005 ORTHO05D003757 4.3e-118 428.3 265 83.4
Sopen10g028260 Solanum pennellii HOM05D002005 ORTHO05D003757 4.5e-107 391.7 241 85.1
Nitab4.5_0000123g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 2.0e-94 349.7 267 72.7
Nitab4.5_0007999g0010 Nicotiana tabacum HOM05D002005 ORTHO05D003757 6.5e-90 334.7 267 70.0
Peaxi162Scf00003g05364 Petunia axillaris HOM05D002005 ORTHO05D003757 5.4e-76 288.5 263 65.8
Peaxi162Scf00153g01023 Petunia axillaris HOM05D002005 ORTHO05D003757 3.9e-66 255.8 330 49.7
Cc00_g08730 Coffea canephora HOM05D002005 ORTHO05D003757 1.9e-57 226.9 300 50.0
Dinv37045 Davidia involucrata HOM05D002005 ORTHO05D003757 2.9e-53 213.0 315 47.0
Oeu023030.1 Olea europaea HOM05D002005 ORTHO05D003757 4.9e-53 212.2 310 47.4
Sopen10g031700 Solanum pennellii HOM05D002005 ORTHO05D003757 8.3e-53 211.5 372 42.2
Solyc10g081200.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 2.4e-52 209.9 380 42.6
Nitab4.5_0003808g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 4.1e-52 209.1 370 41.4
PGSC0003DMG400028204 Solanum tuberosum HOM05D002005 ORTHO05D003757 2.7e-51 206.5 378 41.0
SalBow6G5301 Salvia bowleyana HOM05D002005 ORTHO05D003757 8.6e-50 201.4 300 49.3
SalBow6G5969 Salvia bowleyana HOM05D002005 ORTHO05D003757 8.6e-50 201.4 300 49.3
Oeu044220.1 Olea europaea HOM05D002005 ORTHO05D003757 1.9e-49 200.3 315 47.0
MSTRG.19759 Avicennia marina HOM05D002005 ORTHO05D003757 2.5e-49 199.9 306 45.8
Nitab4.5_0000062g0420 Nicotiana tabacum HOM05D002005 ORTHO05D003757 7.3e-49 198.4 413 38.3
Actinidia37843 Actinidia chinensis HOM05D002005 ORTHO05D003757 8.1e-48 194.9 300 45.7
CSS0037844 Camellia sinensis var. sinensis HOM05D002005 ORTHO05D003757 3.1e-47 193.0 293 44.7
MSTRG.6275 Avicennia marina HOM05D002005 ORTHO05D003757 4.0e-47 192.6 310 44.5
RhsimUnG0023200 Rhododendron simsii HOM05D002005 ORTHO05D003757 4.9e-45 185.7 305 43.6
Glyma.03G004800 Glycine max HOM05D002005 ORTHO05D003757 2.4e-44 183.3 305 41.0
Lalb_Chr14g0365081 Lupinus albus HOM05D002005 ORTHO05D003757 9.3e-44 181.4 303 42.2
Migut.J01577 Erythranthe guttata HOM05D002005 ORTHO05D003757 1.6e-43 180.6 327 41.6
Ca_03430_v3 Cicer arietinum L. HOM05D002005 ORTHO05D003757 1.0e-42 177.9 314 42.4
Lj1P1075T62 Lonicera japonica HOM05D002005 ORTHO05D003757 1.0e-42 177.9 304 44.1
Glyma.19G121300 Glycine max HOM05D002005 ORTHO05D003757 3.0e-42 176.4 301 39.2
CAN.G128.110 Capsicum annuum HOM05D002005 ORTHO05D003757 6.6e-42 175.3 399 37.6
Medtr7g087490 Medicago truncatula HOM05D002005 ORTHO05D003757 1.5e-41 174.1 298 42.6
VMungo1383G0221 Vigna mungo HOM05D002005 ORTHO05D003757 7.3e-41 171.8 312 40.1
Manes.08G155700 Manihot esculenta HOM05D002005 ORTHO05D003757 1.3e-40 171.0 318 38.4
Phvul.001G101800 Phaseolus vulgaris HOM05D002005 ORTHO05D003757 1.6e-40 170.6 310 40.6
TAR623G1062 Trochodendron aralioides HOM05D002005 ORTHO05D003757 3.1e-39 166.4 290 42.8
SGA_v2.0_scaffold66G22332 Striga asiatica HOM05D002005 ORTHO05D003757 5.3e-39 165.6 308 41.9
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 2.6e-38 163.3 296 41.6
QL07p015943 Quercus lobata HOM05D002005 ORTHO05D003757 1.3e-37 161.0 321 39.9
TPR.G23643 Trifolium pratense HOM05D002005 ORTHO05D003757 1.7e-37 160.6 305 40.0
unitig_21.g20665 Utricularia gibba HOM05D002005 ORTHO05D003757 1.4e-36 157.5 301 38.5
Potri.019G044500 Populus trichocarpa HOM05D002005 ORTHO05D003757 1.2e-35 154.5 310 38.1
Cfa019886 Carpinus fangiana HOM05D002005 ORTHO05D003757 3.5e-35 152.9 319 39.8
Duzib177G0589 Durio zibethinus HOM05D002005 ORTHO05D003757 3.5e-35 152.9 328 38.4
Manes.09G134400 Manihot esculenta HOM05D002005 ORTHO05D003757 3.5e-35 152.9 308 35.7
Cpa.g.sc73.39 Carica papaya HOM05D002005 ORTHO05D003757 4.6e-35 152.5 311 38.6
Psat3g084320 Pisum sativum HOM05D002005 ORTHO05D003757 4.6e-35 152.5 312 38.1
Prupe.7G025700 Prunus persica HOM05D002005 ORTHO05D003757 1.0e-34 151.4 309 38.8
Sabra19G0054900 Salix brachista HOM05D002005 ORTHO05D003757 1.0e-34 151.4 307 37.5
Haze_20366 Corylus avellana HOM05D002005 ORTHO05D003757 1.3e-34 151.0 311 38.3
Eucgr.A02165 Eucalyptus grandis HOM05D002005 ORTHO05D003757 1.7e-34 150.6 343 36.2
FvH4_1g29420 Fragaria vesca HOM05D002005 ORTHO05D003757 3.0e-34 149.8 284 38.7
FAN19G0929 Fragaria x ananassa HOM05D002005 ORTHO05D003757 3.0e-34 149.8 288 38.2
GSVIVG01029896001 Vitis vinifera HOM05D002005 ORTHO05D003757 3.0e-34 149.8 305 38.7
FAN26G2169 Fragaria x ananassa HOM05D002005 ORTHO05D003757 3.9e-34 149.4 285 38.2
FAN28G0247 Fragaria x ananassa HOM05D002005 ORTHO05D003757 6.6e-34 148.7 288 38.2
SGA_v2.0_scaffold240G44144 Striga asiatica HOM05D002005 ORTHO05D003757 6.6e-34 148.7 273 38.5
TWI34G0003 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 6.6e-34 148.7 313 36.7
Potri.013G068800 Populus trichocarpa HOM05D002005 ORTHO05D003757 2.5e-33 146.7 298 36.2
arahy.Tifrunner.gnm1.ann1.M37KEN Arachis hypogaea HOM05D002005 ORTHO05D003757 3.3e-33 146.4 305 40.0
MSTRG.10764 Avicennia marina HOM05D002005 ORTHO05D003757 4.3e-33 146.0 298 36.6
arahy.Tifrunner.gnm1.ann1.QNMS29 Arachis hypogaea HOM05D002005 ORTHO05D003757 5.6e-33 145.6 306 39.5
Oeu060743.1 Olea europaea HOM05D002005 ORTHO05D003757 1.6e-32 144.1 298 40.3
Atru.chr2.1605 Acer truncatum HOM05D002005 ORTHO05D003757 2.1e-32 143.7 327 38.8
PGR042G3731 Punica granatum HOM05D002005 ORTHO05D003757 2.1e-32 143.7 314 38.9
DCAR_020635 Daucus carota HOM05D002005 ORTHO05D003757 3.6e-32 142.9 298 37.2
Duzib106G2027 Durio zibethinus HOM05D002005 ORTHO05D003757 3.6e-32 142.9 298 36.9
RcHm_v2.0_Chr3g0495491 Rosa chinensis HOM05D002005 ORTHO05D003757 4.8e-32 142.5 288 37.8
MBI19_g06602_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 1.4e-31 141.0 279 36.6
Sc22g0002340 Simmondsia chinensis HOM05D002005 ORTHO05D003757 1.4e-31 141.0 306 38.9
CiPaw.09G053000 Carya illinoinensis HOM05D002005 ORTHO05D003757 1.8e-31 140.6 342 36.0
CiPaw.10G044600 Carya illinoinensis HOM05D002005 ORTHO05D003757 1.8e-31 140.6 357 34.7
TWI32G1337 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 2.4e-31 140.2 305 36.4
THA.LOC104802888 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 5.3e-31 139.0 301 38.9
ClCG09G013260 Citrullus lanatus HOM05D002005 ORTHO05D003757 4.5e-30 136.0 346 33.5
FAN20G0782 Fragaria x ananassa HOM05D002005 ORTHO05D003757 9.9e-30 134.8 266 38.3
CANSAT78G2106 Cannabis sativa HOM05D002005 ORTHO05D003757 1.7e-29 134.0 326 35.0
Gohir.D13G102100 Gossypium hirsutum HOM05D002005 ORTHO05D003757 1.7e-29 134.0 320 36.2
Gohir.A13G097000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 2.9e-29 133.3 313 36.1
MD05G1057800 Malus domestica HOM05D002005 ORTHO05D003757 2.9e-29 133.3 291 36.8
Nn7g38016 Nelumbo nucifera HOM05D002005 ORTHO05D003757 4.9e-29 132.5 283 38.5
Sed0005780 Sechium edule HOM05D002005 ORTHO05D003757 4.2e-28 129.4 322 34.8
FAN27G2381 Fragaria x ananassa HOM05D002005 ORTHO05D003757 5.4e-28 129.0 270 37.8
Gorai.013G114300 Gossypium raimondii HOM05D002005 ORTHO05D003757 5.4e-28 129.0 321 35.8
Gorai.007G250800 Gossypium raimondii HOM05D002005 ORTHO05D003757 1.2e-27 127.9 313 36.1
MD14G1012900 Malus domestica HOM05D002005 ORTHO05D003757 1.6e-27 127.5 394 31.7
Carub.0006s1612 Capsella rubella HOM05D002005 ORTHO05D003757 2.7e-27 126.7 318 36.8
Gohir.D11G237400 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.5e-27 126.3 312 35.3
Duzib128G1239 Durio zibethinus HOM05D002005 ORTHO05D003757 4.6e-27 125.9 325 33.5
Duzib128G1593 Durio zibethinus HOM05D002005 ORTHO05D003757 4.6e-27 125.9 325 33.5
Migut.N01846 Erythranthe guttata HOM05D002005 ORTHO05D003757 6.0e-27 125.6 239 43.9
FvH4_2g10091 Fragaria vesca HOM05D002005 ORTHO05D003757 3.0e-26 123.2 256 38.7
SalBow1G6156 Salvia bowleyana HOM05D002005 ORTHO05D003757 3.0e-26 123.2 308 37.7
Aqoxy3G00499 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 8.7e-26 121.7 288 33.3
BcaC04g18741 Brassica carinata HOM05D002005 ORTHO05D003757 1.5e-25 120.9 287 35.5
BolC9t58754H Brassica oleracea HOM05D002005 ORTHO05D003757 1.5e-25 120.9 287 35.5
MD12G1015000 Malus domestica HOM05D002005 ORTHO05D003757 1.9e-25 120.6 119 53.8
Lj1g0005282 Lotus japonicus HOM05D002005 ORTHO05D003757 5.6e-25 119.0 258 37.6
RcHm_v2.0_Chr6g0267051 Rosa chinensis HOM05D002005 ORTHO05D003757 5.6e-25 119.0 244 34.8
BraA10t44218Z Brassica rapa HOM05D002005 ORTHO05D003757 7.4e-25 118.6 287 36.2
C09p59060 Brassica napus HOM05D002005 ORTHO05D003757 9.6e-25 118.2 288 35.4
C09p59080 Brassica napus HOM05D002005 ORTHO05D003757 9.6e-25 118.2 288 35.4
Prupe.8G087600 Prunus persica HOM05D002005 ORTHO05D003757 2.8e-24 116.7 275 36.0
THA.LOC104820809 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 4.8e-24 115.9 296 35.5
A10p21570 Brassica napus HOM05D002005 ORTHO05D003757 1.4e-23 114.4 289 34.9
CsaV3_4G031680 Cucumis sativus L. HOM05D002005 ORTHO05D003757 1.8e-23 114.0 199 36.7
MELO3C008875.2 Cucumis melo HOM05D002005 ORTHO05D003757 2.4e-23 113.6 143 44.1
SalBow1G2425 Salvia bowleyana HOM05D002005 ORTHO05D003757 3.1e-23 113.2 290 36.9
BcaB08g36725 Brassica carinata HOM05D002005 ORTHO05D003757 1.5e-22 110.9 296 34.8
Ciclev10030490m.g Citrus clementina HOM05D002005 ORTHO05D003757 1.5e-22 110.9 431 30.6
HanXRQChr00c0297g0573161 Helianthus annuus HOM05D002005 ORTHO05D003757 2.0e-22 110.5 307 34.9
Sed0026327 Sechium edule HOM05D002005 ORTHO05D003757 2.6e-22 110.2 279 31.2
ATR0307G088 Amborella trichopoda HOM05D002005 ORTHO05D003757 1.0e-21 108.2 319 33.5
FAN24G1358 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.7e-21 107.5 222 36.9
EL10Ac9g21403 Beta vulgaris HOM05D002005 ORTHO05D003757 4.9e-21 105.9 138 44.9
ClCG04G004830 Citrullus lanatus HOM05D002005 ORTHO05D003757 8.4e-21 105.1 337 30.0
Thhalv10012439m.g Eutrema salsugineum HOM05D002005 ORTHO05D003757 1.4e-20 104.4 316 33.9
Thecc.05G236600 Theobroma cacao HOM05D002005 ORTHO05D003757 1.4e-20 104.4 312 31.7
Lsat_1_v5_gn_8_85341 Lactuca sativa HOM05D002005 ORTHO05D003757 1.9e-20 104.0 282 31.6
FAN15G1233 Fragaria x ananassa HOM05D002005 ORTHO05D003757 4.2e-20 102.8 266 34.6
Hund15172 Selenicereus undatus HOM05D002005 ORTHO05D003757 4.2e-20 102.8 471 27.8
Gohir.A13G160000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 7.1e-20 102.1 327 31.8
Sp6g26360 Schrenkiella parvula HOM05D002005 ORTHO05D003757 7.1e-20 102.1 315 33.0
CARHR195210 Cardamine hirsuta HOM05D002005 ORTHO05D003757 4.6e-19 99.4 295 31.9
AL1G51410 Arabidopsis lyrata HOM05D002005 ORTHO05D003757 1.8e-18 97.4 293 29.0
Gorai.013G197500 Gossypium raimondii HOM05D002005 ORTHO05D003757 1.8e-18 97.4 329 30.7
CDE08G0232 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 2.3e-18 97.1 254 32.3
Gohir.D13G165200 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.0e-18 96.7 334 30.5
Aa31LG11G11930 Aethionema arabicum HOM05D002005 ORTHO05D003757 6.7e-18 95.5 299 31.1
Ah.13g070760 Amaranthus hybridus HOM05D002005 ORTHO05D003757 8.7e-18 95.1 403 29.8
BcaB01g05164 Brassica carinata HOM05D002005 ORTHO05D003757 8.7e-18 95.1 315 31.7
BolC3t13486H Brassica oleracea HOM05D002005 ORTHO05D003757 8.7e-18 95.1 315 31.7
BcaB01g04923 Brassica carinata HOM05D002005 ORTHO05D003757 1.1e-17 94.7 304 31.6
A03p08550 Brassica napus HOM05D002005 ORTHO05D003757 1.1e-17 94.7 303 30.7
BraA03t10181Z Brassica rapa HOM05D002005 ORTHO05D003757 3.3e-17 93.2 298 32.2
C03p09980 Brassica napus HOM05D002005 ORTHO05D003757 4.3e-17 92.8 316 31.3
AUR62018799 Chenopodium quinoa HOM05D002005 ORTHO05D003757 5.7e-17 92.4 263 31.6
AT5G17910 Arabidopsis thaliana HOM05D002005 ORTHO05D003757 2.1e-16 90.5 302 30.8
AUR62007203 Chenopodium quinoa HOM05D002005 ORTHO05D003757 2.8e-16 90.1 263 30.4
ECA236G4805 Erigeron canadensis HOM05D002005 ORTHO05D003757 1.4e-15 87.8 268 35.4
Hma1.2p1_1291F.1_g273630 Hydrangea macrophylla HOM05D002005 ORTHO05D003757 5.3e-15 85.9 255 32.5
MBI13_g15011_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 5.3e-15 85.9 276 31.9
HPP92_005921 Vanilla planifolia HOM05D002005 ORTHO05D003757 5.3e-15 85.9 290 26.9
PSO210G7347 Papaver somniferum HOM05D002005 ORTHO05D003757 2.2e-13 80.5 303 28.7
PSO532G0028 Papaver somniferum HOM05D002005 ORTHO05D003757 6.5e-13 79.0 276 29.7
PSO210G3936 Papaver somniferum HOM05D002005 ORTHO05D003757 1.1e-12 78.2 299 30.4
Sc01g0007860 Simmondsia chinensis HOM05D002005 ORTHO05D003757 1.4e-12 77.8 134 37.3
Os01g0812050 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 3.5e-11 73.2 378 26.5
PSO339G2450 Papaver somniferum HOM05D002005 ORTHO05D003757 3.5e-11 73.2 293 28.7
PSO541G2770 Papaver somniferum HOM05D002005 ORTHO05D003757 7.9e-11 72.0 272 27.9
SEGI_17680 Sequoiadendron giganteum HOM05D002005 ORTHO05D003757 1.0e-10 71.6 71 56.3
PSO801G0543 Papaver somniferum HOM05D002005 ORTHO05D003757 2.3e-10 70.5 290 28.3
Aqoxy4G02664 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 3.3e-09 66.6 278 27.7
Nn2g11384 Nelumbo nucifera HOM05D002005 ORTHO05D003757 3.3e-09 66.6 207 30.0
Lsat_1_v5_gn_9_30121 Lactuca sativa HOM05D002005 ORTHO05D003757 7.4e-09 65.5 246 26.8
HanXRQChr10g0293151 Helianthus annuus HOM05D002005 ORTHO05D003757 2.8e-08 63.5 76 44.7
Zm00001eb150100 Zea mays HOM05D002005 ORTHO05D003757 3.7e-08 63.2 368 26.4
Oeu060745.1 Olea europaea HOM05D002005 ORTHO05D003757 1.1e-07 61.6 125 41.6
Zm00001eb150130 Zea mays HOM05D002005 ORTHO05D003757 6.9e-07 58.9 377 25.2
AUR62037108 Chenopodium quinoa HOM05D002005 ORTHO05D003757 9.0e-07 58.5 376 25.5
ECA247G0685 Erigeron canadensis HOM05D002005 ORTHO05D003757 1.5e-06 57.8 278 28.1
Os11g0130800 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 3.4e-06 56.6 309 23.3
Os12g0127650 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 3.4e-06 56.6 309 23.3


User provided reference genes

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