Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g049560.3 Solanum lycopersicum HOM05D000916 ORTHO05D003833 1.2e-20 102.1 46 100.0
Solyc01g088090.3 Solanum lycopersicum HOM05D000916 ORTHO05D003833 1.8e-16 88.2 45 86.7
Sopen01g034960 Solanum pennellii HOM05D000916 ORTHO05D003833 1.8e-16 88.2 45 86.7
PGSC0003DMG400006768 Solanum tuberosum HOM05D000916 ORTHO05D003833 1.8e-16 88.2 45 86.7
CAN.G410.9 Capsicum annuum HOM05D000916 ORTHO05D003833 5.8e-15 83.2 45 80.0
Nitab4.5_0002187g0050 Nicotiana tabacum HOM05D000916 ORTHO05D003833 1.3e-14 82.0 45 80.0
Nitab4.5_0006695g0060 Nicotiana tabacum HOM05D000916 ORTHO05D003833 2.2e-14 81.3 45 77.8
Peaxi162Scf00071g00942 Petunia axillaris HOM05D000916 ORTHO05D003833 6.4e-14 79.7 45 75.6
Peaxi162Scf01108g00012 Petunia axillaris HOM05D000916 ORTHO05D003833 1.4e-13 78.6 45 75.6
Actinidia21532 Actinidia chinensis HOM05D000916 ORTHO05D003833 3.2e-13 77.4 45 71.1
CiPaw.13G008700 Carya illinoinensis HOM05D000916 ORTHO05D003833 3.2e-13 77.4 45 71.1
Hma1.2p1_0269F.1_g107780 Hydrangea macrophylla HOM05D000916 ORTHO05D003833 3.2e-13 77.4 45 71.1
Lj9A642T54 Lonicera japonica HOM05D000916 ORTHO05D003833 3.2e-13 77.4 45 66.7
Eucgr.G03276 Eucalyptus grandis HOM05D000916 ORTHO05D003833 7.1e-13 76.3 45 68.9
Nitab4.5_0008059g0020 Nicotiana tabacum HOM05D000916 ORTHO05D003833 7.1e-13 76.3 45 71.1
QL04p010554 Quercus lobata HOM05D000916 ORTHO05D003833 7.1e-13 76.3 45 68.9
Rhsim01G0124600 Rhododendron simsii HOM05D000916 ORTHO05D003833 9.2e-13 75.9 45 73.3
Nitab4.5_0000087g0130 Nicotiana tabacum HOM05D000916 ORTHO05D003833 1.6e-12 75.1 45 68.9
PGSC0003DMG400023127 Solanum tuberosum HOM05D000916 ORTHO05D003833 2.7e-12 74.3 36 88.9
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 3.5e-12 73.9 45 64.4
Oeu014600.1 Olea europaea HOM05D000916 ORTHO05D003833 3.5e-12 73.9 45 66.7
Ciclev10031731m.g Citrus clementina HOM05D000916 ORTHO05D003833 4.6e-12 73.6 45 66.7
TAR633G0084 Trochodendron aralioides HOM05D000916 ORTHO05D003833 4.6e-12 73.6 45 66.7
Cc04_g14700 Coffea canephora HOM05D000916 ORTHO05D003833 6.0e-12 73.2 45 66.7
Dinv43398 Davidia involucrata HOM05D000916 ORTHO05D003833 7.8e-12 72.8 45 62.2
Migut.N01808 Erythranthe guttata HOM05D000916 ORTHO05D003833 7.8e-12 72.8 45 64.4
Medtr3g034670 Medicago truncatula HOM05D000916 ORTHO05D003833 7.8e-12 72.8 45 66.7
Atru.chr11.2554 Acer truncatum HOM05D000916 ORTHO05D003833 1.0e-11 72.4 45 66.7
Haze_03096 Corylus avellana HOM05D000916 ORTHO05D003833 1.0e-11 72.4 45 62.2
Dinv07420 Davidia involucrata HOM05D000916 ORTHO05D003833 1.3e-11 72.0 45 62.2
Duzib138G1830 Durio zibethinus HOM05D000916 ORTHO05D003833 1.3e-11 72.0 45 62.2
Glyma.09G226000 Glycine max HOM05D000916 ORTHO05D003833 1.3e-11 72.0 45 64.4
GSVIVG01001445001 Vitis vinifera HOM05D000916 ORTHO05D003833 1.3e-11 72.0 45 64.4
CANSAT80G0128 Cannabis sativa HOM05D000916 ORTHO05D003833 1.7e-11 71.6 45 60.0
ClCG09G004480 Citrullus lanatus HOM05D000916 ORTHO05D003833 1.7e-11 71.6 45 66.7
MSTRG.5048 Avicennia marina HOM05D000916 ORTHO05D003833 2.3e-11 71.2 45 64.4
Gohir.D12G102900 Gossypium hirsutum HOM05D000916 ORTHO05D003833 2.3e-11 71.2 45 62.2
DCAR_031814 Daucus carota HOM05D000916 ORTHO05D003833 3.0e-11 70.9 45 62.2
RcHm_v2.0_Chr1g0318891 Rosa chinensis HOM05D000916 ORTHO05D003833 3.0e-11 70.9 45 62.2
vmacro21144 Vaccinium macrocarpon HOM05D000916 ORTHO05D003833 3.0e-11 70.9 45 68.9
FAN01G1598 Fragaria x ananassa HOM05D000916 ORTHO05D003833 3.9e-11 70.5 45 62.2
Glyma.11G157976 Glycine max HOM05D000916 ORTHO05D003833 3.9e-11 70.5 45 64.4
PSO339G1599 Papaver somniferum HOM05D000916 ORTHO05D003833 3.9e-11 70.5 45 62.2
Haze_03120 Corylus avellana HOM05D000916 ORTHO05D003833 5.1e-11 70.1 44 61.4
Gorai.008G112100 Gossypium raimondii HOM05D000916 ORTHO05D003833 5.1e-11 70.1 45 60.0
MD07G1025100 Malus domestica HOM05D000916 ORTHO05D003833 5.1e-11 70.1 45 62.2
Manes.06G024300 Manihot esculenta HOM05D000916 ORTHO05D003833 5.1e-11 70.1 45 62.2
Nn2g15162 Nelumbo nucifera HOM05D000916 ORTHO05D003833 5.1e-11 70.1 45 62.2
Thecc.01G403500 Theobroma cacao HOM05D000916 ORTHO05D003833 5.1e-11 70.1 45 60.0
Aqoxy2G00215 Aquilegia oxysepala HOM05D000916 ORTHO05D003833 6.6e-11 69.7 45 60.0
Gohir.A08G141100 Gossypium hirsutum HOM05D000916 ORTHO05D003833 6.6e-11 69.7 45 60.0
Gohir.D08G162200 Gossypium hirsutum HOM05D000916 ORTHO05D003833 6.6e-11 69.7 45 60.0
Gorai.004G168500 Gossypium raimondii HOM05D000916 ORTHO05D003833 6.6e-11 69.7 45 60.0
MSTRG.17001 Avicennia marina HOM05D000916 ORTHO05D003833 8.6e-11 69.3 45 66.7
MBI13_g36813_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D003833 8.6e-11 69.3 45 57.8
MD02G1299000 Malus domestica HOM05D000916 ORTHO05D003833 8.6e-11 69.3 45 62.2
HPP92_011273 Vanilla planifolia HOM05D000916 ORTHO05D003833 8.6e-11 69.3 45 64.4
Cpa.g.sc197.25 Carica papaya HOM05D000916 ORTHO05D003833 1.1e-10 68.9 45 62.2
MELO3C023590.2 Cucumis melo HOM05D000916 ORTHO05D003833 1.1e-10 68.9 45 64.4
Prupe.2G025100 Prunus persica HOM05D000916 ORTHO05D003833 1.1e-10 68.9 45 60.0
arahy.Tifrunner.gnm1.ann1.S8KRYV Arachis hypogaea HOM05D000916 ORTHO05D003833 1.5e-10 68.6 45 60.0
arahy.Tifrunner.gnm1.ann1.YN40WG Arachis hypogaea HOM05D000916 ORTHO05D003833 1.5e-10 68.6 45 60.0
CSS0019872 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D003833 1.5e-10 68.6 45 64.4
Glyma.12G010600 Glycine max HOM05D000916 ORTHO05D003833 1.5e-10 68.6 45 60.0
Potri.009G054800 Populus trichocarpa HOM05D000916 ORTHO05D003833 1.5e-10 68.6 45 57.8
RcHm_v2.0_Chr1g0318661 Rosa chinensis HOM05D000916 ORTHO05D003833 1.5e-10 68.6 45 62.2
Migut.B01255 Erythranthe guttata HOM05D000916 ORTHO05D003833 1.9e-10 68.2 44 63.6
FvH4_7g01940 Fragaria vesca HOM05D000916 ORTHO05D003833 1.9e-10 68.2 45 60.0
FAN03G0804 Fragaria x ananassa HOM05D000916 ORTHO05D003833 1.9e-10 68.2 45 60.0
FAN03G2955 Fragaria x ananassa HOM05D000916 ORTHO05D003833 1.9e-10 68.2 45 60.0
FAN06G1297 Fragaria x ananassa HOM05D000916 ORTHO05D003833 1.9e-10 68.2 45 60.0
Sed0027440 Sechium edule HOM05D000916 ORTHO05D003833 1.9e-10 68.2 45 62.2
TPR.G14573 Trifolium pratense HOM05D000916 ORTHO05D003833 1.9e-10 68.2 45 62.2
Phvul.005G035700 Phaseolus vulgaris HOM05D000916 ORTHO05D003833 2.5e-10 67.8 45 60.0
SGA_v2.0_scaffold119G32770 Striga asiatica HOM05D000916 ORTHO05D003833 2.5e-10 67.8 45 62.2
CsaV3_7G030660 Cucumis sativus L. HOM05D000916 ORTHO05D003833 3.3e-10 67.4 45 62.2
CiPaw.14G004400 Carya illinoinensis HOM05D000916 ORTHO05D003833 4.3e-10 67.0 45 62.2
unitig_0.g979 Utricularia gibba HOM05D000916 ORTHO05D003833 5.6e-10 66.6 45 60.0
ATR0320G046 Amborella trichopoda HOM05D000916 ORTHO05D003833 7.3e-10 66.2 45 57.8
Lalb_Chr04g0263761 Lupinus albus HOM05D000916 ORTHO05D003833 7.3e-10 66.2 44 61.4
CDE09G0790 Ceratophyllum demersum HOM05D000916 ORTHO05D003833 9.5e-10 65.9 45 62.2
Gohir.A12G100000 Gossypium hirsutum HOM05D000916 ORTHO05D003833 9.5e-10 65.9 45 57.8
Nn7g36359 Nelumbo nucifera HOM05D000916 ORTHO05D003833 9.5e-10 65.9 45 57.8
unitig_61.g26130 Utricularia gibba HOM05D000916 ORTHO05D003833 9.5e-10 65.9 45 60.0
Aa31LG2G15250 Aethionema arabicum HOM05D000916 ORTHO05D003833 1.2e-09 65.5 45 57.8
Carub.0006s1198 Capsella rubella HOM05D000916 ORTHO05D003833 1.2e-09 65.5 45 55.6
Ca_14192_v3 Cicer arietinum L. HOM05D000916 ORTHO05D003833 1.2e-09 65.5 44 61.4
PGR031G0424 Punica granatum HOM05D000916 ORTHO05D003833 1.2e-09 65.5 45 60.0
Sp6g30220 Schrenkiella parvula HOM05D000916 ORTHO05D003833 1.2e-09 65.5 45 57.8
Thhalv10013390m.g Eutrema salsugineum HOM05D000916 ORTHO05D003833 1.6e-09 65.1 45 55.6
Lsat_1_v5_gn_1_100221 Lactuca sativa HOM05D000916 ORTHO05D003833 1.6e-09 65.1 45 55.6
Sc11g0008990 Simmondsia chinensis HOM05D000916 ORTHO05D003833 1.6e-09 65.1 45 55.6
SalBow5G3829 Salvia bowleyana HOM05D000916 ORTHO05D003833 2.1e-09 64.7 44 61.4
Lj3g0008484 Lotus japonicus HOM05D000916 ORTHO05D003833 2.8e-09 64.3 45 57.8
A02p02190 Brassica napus HOM05D000916 ORTHO05D003833 3.6e-09 63.9 45 57.8
C02p06440 Brassica napus HOM05D000916 ORTHO05D003833 3.6e-09 63.9 45 57.8
BolC2t06590H Brassica oleracea HOM05D000916 ORTHO05D003833 3.6e-09 63.9 45 57.8
BraA02t05192Z Brassica rapa HOM05D000916 ORTHO05D003833 3.6e-09 63.9 45 57.8
CDE08G0464 Ceratophyllum demersum HOM05D000916 ORTHO05D003833 3.6e-09 63.9 45 57.8
BcaNung04182 Brassica carinata HOM05D000916 ORTHO05D003833 4.7e-09 63.5 45 57.8
HanXRQChr05g0159011 Helianthus annuus HOM05D000916 ORTHO05D003833 4.7e-09 63.5 45 55.6
BcaB01g05336 Brassica carinata HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
A03p06180 Brassica napus HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
C03p07190 Brassica napus HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
BolC3t13220H Brassica oleracea HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
BraA03t09952Z Brassica rapa HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
THA.LOC104819108 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
VMungo1080G0664 Vigna mungo HOM05D000916 ORTHO05D003833 6.2e-09 63.2 45 53.3
CARHR199640 Cardamine hirsuta HOM05D000916 ORTHO05D003833 8.1e-09 62.8 45 53.3
ECA248G0906 Erigeron canadensis HOM05D000916 ORTHO05D003833 1.1e-08 62.4 44 56.8
Hund02666 Selenicereus undatus HOM05D000916 ORTHO05D003833 1.4e-08 62.0 50 54.0
AL6G24420 Arabidopsis lyrata HOM05D000916 ORTHO05D003833 2.4e-08 61.2 45 51.1
THA.LOC104827431 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 3.1e-08 60.8 44 54.5
THA.LOC104827432 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 3.1e-08 60.8 44 54.5
THA.LOC104827434 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 3.1e-08 60.8 44 54.5
THA.LOC109117201 Tarenaya hassleriana HOM05D000916 ORTHO05D003833 3.1e-08 60.8 44 54.5
AT5G13800 Arabidopsis thaliana HOM05D000916 ORTHO05D003833 4.0e-08 60.5 45 48.9
Duzib133G0052 Durio zibethinus HOM05D000916 ORTHO05D003833 5.2e-08 60.1 47 55.3
Zm00001eb231810 Zea mays HOM05D000916 ORTHO05D003833 5.2e-08 60.1 45 48.9
AUR62023112 Chenopodium quinoa HOM05D000916 ORTHO05D003833 6.8e-08 59.7 45 55.6
TWI73G1133 Tripterygium wilfordii HOM05D000916 ORTHO05D003833 6.8e-08 59.7 45 48.9
VMungo1127G2227 Vigna mungo HOM05D000916 ORTHO05D003833 8.9e-08 59.3 44 52.3
EL10Ac2g04388 Beta vulgaris HOM05D000916 ORTHO05D003833 1.5e-07 58.5 45 55.6
AUR62009433 Chenopodium quinoa HOM05D000916 ORTHO05D003833 2.0e-07 58.2 45 53.3
Os06g0354700 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D003833 4.4e-07 57.0 45 46.7
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 3.8e-06 53.9 42 50.0
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 8.4e-06 52.8 33 60.6


User provided reference genes

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