Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047955.1 Solanum lycopersicum HOM05D039028 ORTHO05D037659 1.7e-51 205.7 103 100.0
Solyc02g032523.1 Solanum lycopersicum HOM05D039028 ORTHO05D037659 3.3e-10 68.6 51 66.7
Ca_02932_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004685 5.6e-10 67.8 69 52.2
Medtr2g060830 Medicago truncatula HOM05D000276 ORTHO05D004685 5.6e-10 67.8 69 52.2
Manes.03G041500 Manihot esculenta HOM05D000276 ORTHO05D004685 9.6e-10 67.0 69 52.2
CAN.G1661.16 Capsicum annuum HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
Cfa003519 Carpinus fangiana HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
CiPaw.01G216900 Carya illinoinensis HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
Haze_16048 Corylus avellana HOM05D002249 ORTHO05D004685 1.3e-09 66.6 69 52.2
Lalb_Chr19g0134491 Lupinus albus HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
Nitab4.5_0000073g0160 Nicotiana tabacum HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
Solyc12g009140.3 Solanum lycopersicum HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
PGSC0003DMG400002904 Solanum tuberosum HOM05D000276 ORTHO05D004685 1.3e-09 66.6 69 52.2
Lj3g0028021 Lotus japonicus HOM05D000276 ORTHO05D004685 1.6e-09 66.2 69 50.7
Atru.chr7.1724 Acer truncatum HOM05D000276 ORTHO05D004685 2.1e-09 65.9 69 49.3
Aa31sc209G60 Aethionema arabicum HOM05D000276 ORTHO05D004685 2.1e-09 65.9 81 46.9
MSTRG.15122 Avicennia marina HOM05D000276 ORTHO05D004685 2.1e-09 65.9 69 52.2
Psat1g128160 Pisum sativum HOM05D000276 ORTHO05D004685 2.1e-09 65.9 69 50.7
Sabra06G0109600 Salix brachista HOM05D000276 ORTHO05D004685 2.1e-09 65.9 69 50.7
arahy.Tifrunner.gnm1.ann1.1W9MYV Arachis hypogaea HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
arahy.Tifrunner.gnm1.ann1.NTJB5Y Arachis hypogaea HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
Cc06_g12310 Coffea canephora HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
Dinv20416 Davidia involucrata HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
Dinv37855 Davidia involucrata HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
Lalb_Chr01g0006411 Lupinus albus HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
Psat4g153680 Pisum sativum HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
QL05p003940 Quercus lobata HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
Sc18g0002660 Simmondsia chinensis HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
TPR.G11723 Trifolium pratense HOM05D000276 ORTHO05D004685 2.8e-09 65.5 69 50.7
ATR0053G015 Amborella trichopoda HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 49.3
ClCG07G014530 Citrullus lanatus HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 50.7
COL.COLO4_18079 Corchorus olitorius HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 50.7
Peaxi162Scf00928g00131 Petunia axillaris HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 50.7
Phvul.011G155200 Phaseolus vulgaris HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 49.3
Rhsim03G0226900 Rhododendron simsii HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 49.3
THA.LOC104826597 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 50.7
vmacro06348 Vaccinium macrocarpon HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 49.3
VMungo1127G1993 Vigna mungo HOM05D000276 ORTHO05D004685 3.6e-09 65.1 69 49.3
AL3G43370 Arabidopsis lyrata HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
AT2G05840 Arabidopsis thaliana HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BcaB06g26863 Brassica carinata HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BcaB08g34519 Brassica carinata HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BcaC01g03135 Brassica carinata HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BcaC06g35940 Brassica carinata HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
A07p06390 Brassica napus HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
C03p55710 Brassica napus HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
C07p09530 Brassica napus HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BolC3t17851H Brassica oleracea HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BolC7t41382H Brassica oleracea HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BraA03t13619Z Brassica rapa HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
BraA07t28432Z Brassica rapa HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
CARHR103470 Cardamine hirsuta HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
Migut.A01118 Erythranthe guttata HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 50.7
Thhalv10002649m.g Eutrema salsugineum HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
Glyma.06G254200 Glycine max HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
Glyma.12G147200 Glycine max HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
Manes.04G146500 Manihot esculenta HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 50.7
Mapoly0006s0307 Marchantia polymorpha HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
Medtr8g464460 Medicago truncatula HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 50.7
Sp3g24290 Schrenkiella parvula HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 49.3
SGA_v2.0_scaffold34G13918 Striga asiatica HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 50.7
HPP92_016598 Vanilla planifolia HOM05D000276 ORTHO05D004685 4.8e-09 64.7 69 47.8
CiPaw.02G134600 Carya illinoinensis HOM05D000276 ORTHO05D004685 6.2e-09 64.3 69 49.3
Ciclev10026352m.g Citrus clementina HOM05D000276 ORTHO05D004685 6.2e-09 64.3 69 49.3
Nn6g33706 Nelumbo nucifera HOM05D000276 ORTHO05D004685 6.2e-09 64.3 69 49.3
PGR119G2314 Punica granatum HOM05D000276 ORTHO05D004685 6.2e-09 64.3 69 49.3
TAR383G0186 Trochodendron aralioides HOM05D000276 ORTHO05D004685 6.2e-09 64.3 69 49.3
Duzib150G0912 Durio zibethinus HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Duzib168G2398 Durio zibethinus HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Eucgr.F04398 Eucalyptus grandis HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Gohir.A06G077500 Gossypium hirsutum HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Gohir.A13G189800 Gossypium hirsutum HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Gorai.010G089600 Gossypium raimondii HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Gorai.013G223200 Gossypium raimondii HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Hma1.2p1_0686F.1_g203320 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Hma1.2p1_2485F.1_g323070 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
MD09G1179900 Malus domestica HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
PSO135G0155 Papaver somniferum HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
PSO724G0707 Papaver somniferum HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Potri.006G140400 Populus trichocarpa HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Potri.016G139600 Populus trichocarpa HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Prupe.3G038700 Prunus persica HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Sopen12g004090 Solanum pennellii HOM05D000276 ORTHO05D004685 8.1e-09 63.9 76 47.4
SGA_v2.0_scaffold70G23476 Striga asiatica HOM05D000276 ORTHO05D004685 8.1e-09 63.9 68 50.0
THA.LOC104815341 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
Thecc.09G074900 Theobroma cacao HOM05D000276 ORTHO05D004685 8.1e-09 63.9 69 49.3
A03p44820 Brassica napus HOM05D000276 ORTHO05D004685 1.1e-08 63.5 69 47.8
Duzib187G1428 Durio zibethinus HOM05D000276 ORTHO05D004685 1.1e-08 63.5 69 47.8
Lj5A34T27 Lonicera japonica HOM05D000276 ORTHO05D004685 1.1e-08 63.5 69 49.3
Lj9A533G75 Lonicera japonica HOM05D000276 ORTHO05D004685 1.1e-08 63.5 69 49.3
Zm00001eb005960 Zea mays HOM05D000276 ORTHO05D004685 1.1e-08 63.5 81 44.4
Zm00001eb401790 Zea mays HOM05D000276 ORTHO05D004685 1.1e-08 63.5 81 44.4
SEGI_07422 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.4e-08 63.2 69 47.8
TPR.G14116 Trifolium pratense HOM05D000276 ORTHO05D004685 1.4e-08 63.2 70 48.6
TWI14G0200 Tripterygium wilfordii HOM05D000276 ORTHO05D004685 1.4e-08 63.2 69 47.8
MSTRG.14320 Avicennia marina HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 49.3
CDE05G0959 Ceratophyllum demersum HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
FAN05G1250 Fragaria x ananassa HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
FAN09G1096 Fragaria x ananassa HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
MBI13_g00707_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
MD17G1165500 Malus domestica HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
Os03g0180400 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 46.4
RcHm_v2.0_Chr2g0146201 Rosa chinensis HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
Sabra06G0086100 Salix brachista HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
GSVIVG01016731001 Vitis vinifera HOM05D000276 ORTHO05D004685 1.8e-08 62.8 69 47.8
unitig_37.g12874 Utricularia gibba HOM05D000276 ORTHO05D004685 2.4e-08 62.4 69 50.7
Actinidia26018 Actinidia chinensis HOM05D000276 ORTHO05D004685 3.1e-08 62.0 90 42.2
Dinv42406 Davidia involucrata HOM05D000276 ORTHO05D004685 3.1e-08 62.0 69 47.8
Gohir.D06G076500 Gossypium hirsutum HOM05D000276 ORTHO05D004685 3.1e-08 62.0 69 47.8
TWI23G0762 Tripterygium wilfordii HOM05D000276 ORTHO05D004685 3.1e-08 62.0 69 46.4
AL7G44410 Arabidopsis lyrata HOM05D000276 ORTHO05D004685 4.0e-08 61.6 69 46.4
AT5G35590 Arabidopsis thaliana HOM05D000276 ORTHO05D004685 4.0e-08 61.6 69 46.4
ECA248G0714 Erigeron canadensis HOM05D000276 ORTHO05D004685 4.0e-08 61.6 69 46.4
HanXRQChr04g0094541 Helianthus annuus HOM05D000276 ORTHO05D004685 4.0e-08 61.6 69 46.4
Lsat_1_v5_gn_1_37980 Lactuca sativa HOM05D000276 ORTHO05D004685 4.0e-08 61.6 69 46.4
Pp3c8_24770 Physcomitrium patens HOM05D000276 ORTHO05D004685 4.0e-08 61.6 69 46.4
CSS0024147 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004685 5.3e-08 61.2 69 46.4
FvH4_6g35040 Fragaria vesca HOM05D000276 ORTHO05D004685 5.3e-08 61.2 69 46.4
FAN14G5418 Fragaria x ananassa HOM05D000276 ORTHO05D004685 5.3e-08 61.2 69 46.4
Nn1g00678 Nelumbo nucifera HOM05D000276 ORTHO05D004685 5.3e-08 61.2 69 47.8
CANSAT80G1285 Cannabis sativa HOM05D000276 ORTHO05D004685 6.9e-08 60.8 69 47.8
Ciclev10010323m.g Citrus clementina HOM05D000276 ORTHO05D004685 6.9e-08 60.8 69 47.8
FAN02G3049 Fragaria x ananassa HOM05D000276 ORTHO05D004685 6.9e-08 60.8 69 46.4
SalBow7G1398 Salvia bowleyana HOM05D000276 ORTHO05D004685 6.9e-08 60.8 69 47.8
Oeu007419.1 Olea europaea HOM05D000276 ORTHO05D004685 9.0e-08 60.5 69 46.4
THA.LOC104808878 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 9.0e-08 60.5 69 46.4
Hma1.2p1_0291F.1_g114895 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 1.2e-07 60.1 69 46.4
Potri.006G110800 Populus trichocarpa HOM05D000276 ORTHO05D004685 1.5e-07 59.7 69 46.4
CDE02G1693 Ceratophyllum demersum HOM05D000276 ORTHO05D004685 2.0e-07 59.3 69 46.4
ClCG09G001080 Citrullus lanatus HOM05D000276 ORTHO05D004685 2.0e-07 59.3 69 46.4
MELO3C024343.2 Cucumis melo HOM05D000276 ORTHO05D004685 2.0e-07 59.3 69 46.4
CsaV3_7G034340 Cucumis sativus L. HOM05D000276 ORTHO05D004685 2.0e-07 59.3 69 46.4
Atru.chr1.4042 Acer truncatum HOM05D000276 ORTHO05D004685 2.6e-07 58.9 64 48.4
Actinidia30231 Actinidia chinensis HOM05D000276 ORTHO05D004685 2.6e-07 58.9 69 44.9
Carub.0007s3134 Capsella rubella HOM05D000276 ORTHO05D004685 2.6e-07 58.9 69 43.5
Hund08823 Selenicereus undatus HOM05D000276 ORTHO05D004685 2.6e-07 58.9 69 44.9
Ah.09g229270 Amaranthus hybridus HOM05D000276 ORTHO05D004685 3.4e-07 58.5 69 46.4
EL10Ac8g19042 Beta vulgaris HOM05D000276 ORTHO05D004685 3.4e-07 58.5 69 44.9
Sed0020903 Sechium edule HOM05D000276 ORTHO05D004685 4.5e-07 58.2 69 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2612 Anthoceros agrestis HOM05D000276 ORTHO05D004685 5.8e-07 57.8 53 60.4
Pp3c23_21850 Physcomitrium patens HOM05D000276 ORTHO05D004685 5.8e-07 57.8 69 44.9
Pp3c24_20680 Physcomitrium patens HOM05D000276 ORTHO05D004685 5.8e-07 57.8 69 43.5
Aqoxy3G00422 Aquilegia oxysepala HOM05D000276 ORTHO05D004685 7.6e-07 57.4 69 44.9
Hund26042 Selenicereus undatus HOM05D000276 ORTHO05D004685 7.6e-07 57.4 69 43.5
CBR_g23123 Chara braunii HOM05D000276 ORTHO05D004685 9.9e-07 57.0 55 54.5
DCAR_016110 Daucus carota HOM05D000276 ORTHO05D004685 9.9e-07 57.0 69 42.0
AUR62025264 Chenopodium quinoa HOM05D000276 ORTHO05D004685 1.7e-06 56.2 69 43.5
AUR62028267 Chenopodium quinoa HOM05D000276 ORTHO05D004685 1.7e-06 56.2 69 43.5
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 1.7e-06 56.2 55 50.9
Sed0004763 Sechium edule HOM05D000276 ORTHO05D004685 2.2e-06 55.8 69 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2618 Anthoceros agrestis HOM05D000276 ORTHO05D004685 3.8e-06 55.1 67 46.3


User provided reference genes

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