Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047660.1 Solanum lycopersicum HOM05D002425 ORTHO05D002709 2.7e-17 90.9 45 100.0
Sopen10g018070 Solanum pennellii HOM05D002425 ORTHO05D002709 1.3e-14 82.0 40 100.0
PGSC0003DMG400029016 Solanum tuberosum HOM05D002425 ORTHO05D002709 8.2e-14 79.3 44 88.6
CAN.G74.15 Capsicum annuum HOM05D002425 ORTHO05D002709 7.6e-12 72.8 44 81.8
Nitab4.5_0001259g0060 Nicotiana tabacum HOM05D002425 ORTHO05D002709 3.8e-11 70.5 44 77.3
Nitab4.5_0001259g0070 Nicotiana tabacum HOM05D002425 ORTHO05D002709 1.4e-10 68.6 44 75.0
Nitab4.5_0005861g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 3.2e-10 67.4 44 72.7
Nitab4.5_0027918g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 9.3e-10 65.9 45 75.6
CAN.G162.4 Capsicum annuum HOM05D002425 ORTHO05D002709 7.9e-09 62.8 44 72.7
Hma1.2p1_0369F.1_g137460 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 7.9e-09 62.8 44 65.9
CAN.G74.13 Capsicum annuum HOM05D002425 ORTHO05D002709 1.3e-08 62.0 44 65.9
SalBow6G4961 Salvia bowleyana HOM05D002425 ORTHO05D002709 3.0e-08 60.8 44 65.9
Migut.B00539 Erythranthe guttata HOM05D002425 ORTHO05D002709 5.1e-08 60.1 43 72.1
Os03g0685500 Oryza sativa ssp. japonica HOM05D002425 ORTHO05D002709 5.1e-08 60.1 44 63.6
Solyc10g047650.3 Solanum lycopersicum HOM05D002425 ORTHO05D002709 5.1e-08 60.1 44 65.9
Cpa.g.sc20.24 Carica papaya HOM05D002425 ORTHO05D002709 6.7e-08 59.7 44 68.2
Potri.001G282900 Populus trichocarpa HOM05D002425 ORTHO05D002709 6.7e-08 59.7 45 66.7
CiPaw.05G028600 Carya illinoinensis HOM05D002425 ORTHO05D002709 8.7e-08 59.3 45 68.9
Hma1.2p1_0908F.1_g235530 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 8.7e-08 59.3 45 66.7
Hma1.2p1_2737F.1_g327682 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 8.7e-08 59.3 45 66.7
Nn5g29830 Nelumbo nucifera HOM05D002425 ORTHO05D002709 1.1e-07 58.9 47 66.0
Peaxi162Scf00003g03238 Petunia axillaris HOM05D002425 ORTHO05D002709 1.5e-07 58.5 44 65.9
Sopen10g018060 Solanum pennellii HOM05D002425 ORTHO05D002709 1.5e-07 58.5 44 63.6
CSS0031914 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 1.9e-07 58.2 43 65.1
Sabra16G0176100 Salix brachista HOM05D002425 ORTHO05D002709 1.9e-07 58.2 45 64.4
Actinidia29337 Actinidia chinensis HOM05D002425 ORTHO05D002709 2.5e-07 57.8 43 65.1
Psat5g245800 Pisum sativum HOM05D002425 ORTHO05D002709 2.5e-07 57.8 46 65.2
Sc16g0000640 Simmondsia chinensis HOM05D002425 ORTHO05D002709 3.3e-07 57.4 42 69.0
TAR628G0637 Trochodendron aralioides HOM05D002425 ORTHO05D002709 3.3e-07 57.4 47 61.7
TAR381G1072 Trochodendron aralioides HOM05D002425 ORTHO05D002709 4.3e-07 57.0 44 61.4
GSVIVG01012539001 Vitis vinifera HOM05D002425 ORTHO05D002709 4.3e-07 57.0 45 64.4
Ca_18393_v3 Cicer arietinum L. HOM05D002425 ORTHO05D002709 5.7e-07 56.6 45 64.4
HanXRQChr16g0514501 Helianthus annuus HOM05D002425 ORTHO05D002709 5.7e-07 56.6 44 68.2
Hma1.2p1_0908F.1_g235540 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 5.7e-07 56.6 41 70.7
Hma1.2p1_2737F.1_g327684 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 5.7e-07 56.6 41 70.7
Nn1g05629 Nelumbo nucifera HOM05D002425 ORTHO05D002709 7.4e-07 56.2 45 62.2
Rhsim11G0141600 Rhododendron simsii HOM05D002425 ORTHO05D002709 7.4e-07 56.2 43 60.5
Sabra09G0059800 Salix brachista HOM05D002425 ORTHO05D002709 9.7e-07 55.8 44 59.1
unitig_899.g15644 Utricularia gibba HOM05D002425 ORTHO05D002709 9.7e-07 55.8 44 61.4
CiPaw.06G158800 Carya illinoinensis HOM05D002425 ORTHO05D002709 1.3e-06 55.5 46 65.2
Lj4g0012171 Lotus japonicus HOM05D002425 ORTHO05D002709 1.3e-06 55.5 45 62.2
RcHm_v2.0_Chr6g0270231 Rosa chinensis HOM05D002425 ORTHO05D002709 1.3e-06 55.5 44 65.9
Cc02_g20770 Coffea canephora HOM05D002425 ORTHO05D002709 1.6e-06 55.1 44 65.9
Oeu059900.1 Olea europaea HOM05D002425 ORTHO05D002709 1.6e-06 55.1 43 65.1
vmacro19606 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 1.6e-06 55.1 44 59.1
MSTRG.20275 Avicennia marina HOM05D002425 ORTHO05D002709 2.2e-06 54.7 45 62.2
Gohir.D02G201500 Gossypium hirsutum HOM05D002425 ORTHO05D002709 2.2e-06 54.7 44 63.6
Gorai.005G226300 Gossypium raimondii HOM05D002425 ORTHO05D002709 2.2e-06 54.7 44 63.6
Manes.07G041000 Manihot esculenta HOM05D002425 ORTHO05D002709 2.2e-06 54.7 45 60.0
PSO170G0844 Papaver somniferum HOM05D002425 ORTHO05D002709 2.2e-06 54.7 44 63.6
Ah.02g123430 Amaranthus hybridus HOM05D002425 ORTHO05D002709 2.8e-06 54.3 44 61.4
COL.COLO4_32410 Corchorus olitorius HOM05D002425 ORTHO05D002709 2.8e-06 54.3 46 63.0
Duzib052G1175 Durio zibethinus HOM05D002425 ORTHO05D002709 2.8e-06 54.3 47 61.7
PSO210G7313 Papaver somniferum HOM05D002425 ORTHO05D002709 2.8e-06 54.3 44 63.6
vmacro01869 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 2.8e-06 54.3 40 62.5
CSS0000895 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 3.7e-06 53.9 43 58.1
CSS0029614 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 3.7e-06 53.9 43 58.1
Dinv24141 Davidia involucrata HOM05D002425 ORTHO05D002709 3.7e-06 53.9 45 60.0
Gohir.A03G177800 Gossypium hirsutum HOM05D002425 ORTHO05D002709 3.7e-06 53.9 44 63.6
Lj9C347G10 Lonicera japonica HOM05D002425 ORTHO05D002709 3.7e-06 53.9 45 62.2
Rhsim05G0100900 Rhododendron simsii HOM05D002425 ORTHO05D002709 3.7e-06 53.9 40 65.0
SGA_v2.0_scaffold337G49170 Striga asiatica HOM05D002425 ORTHO05D002709 3.7e-06 53.9 45 62.2
Zm00001eb053330 Zea mays HOM05D002425 ORTHO05D002709 3.7e-06 53.9 44 59.1
Ah.03g143270 Amaranthus hybridus HOM05D002425 ORTHO05D002709 4.8e-06 53.5 45 62.2
CANSAT54G1313 Cannabis sativa HOM05D002425 ORTHO05D002709 4.8e-06 53.5 45 62.2
Peaxi162Scf00152g00827 Petunia axillaris HOM05D002425 ORTHO05D002709 4.8e-06 53.5 43 65.1
Phvul.002G214000 Phaseolus vulgaris HOM05D002425 ORTHO05D002709 4.8e-06 53.5 44 59.1
Potri.009G078100 Populus trichocarpa HOM05D002425 ORTHO05D002709 4.8e-06 53.5 45 57.8
Duzib052G0188 Durio zibethinus HOM05D002425 ORTHO05D002709 6.3e-06 53.1 47 59.6
Gohir.A13G050200 Gossypium hirsutum HOM05D002425 ORTHO05D002709 6.3e-06 53.1 47 57.4
Gohir.D13G048866 Gossypium hirsutum HOM05D002425 ORTHO05D002709 6.3e-06 53.1 47 57.4
Gohir.D13G049000 Gossypium hirsutum HOM05D002425 ORTHO05D002709 6.3e-06 53.1 47 57.4
Gorai.013G054700 Gossypium raimondii HOM05D002425 ORTHO05D002709 6.3e-06 53.1 47 57.4
HanXRQChr10g0297741 Helianthus annuus HOM05D002425 ORTHO05D002709 6.3e-06 53.1 44 63.6
PSO170G5084 Papaver somniferum HOM05D002425 ORTHO05D002709 6.3e-06 53.1 44 61.4
Prupe.8G071500 Prunus persica HOM05D002425 ORTHO05D002709 6.3e-06 53.1 46 63.0
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 6.3e-06 53.1 44 56.8
VMungo0251G1961 Vigna mungo HOM05D002425 ORTHO05D002709 6.3e-06 53.1 45 60.0
Ciclev10029537m.g Citrus clementina HOM05D002425 ORTHO05D002709 8.2e-06 52.8 46 60.9
Duzib132G0972 Durio zibethinus HOM05D002425 ORTHO05D002709 8.2e-06 52.8 47 59.6
Glyma.08G067000 Glycine max HOM05D002425 ORTHO05D002709 8.2e-06 52.8 44 61.4
MBI16_g30313_MAGBIO Magnolia biondii HOM05D002425 ORTHO05D002709 8.2e-06 52.8 45 57.8
Medtr4g093770 Medicago truncatula HOM05D002425 ORTHO05D002709 8.2e-06 52.8 45 60.0
PGR042G3069 Punica granatum HOM05D002425 ORTHO05D002709 8.2e-06 52.8 47 57.4
QL11p025715 Quercus lobata HOM05D002425 ORTHO05D002709 8.2e-06 52.8 45 57.8
Thecc.02G127700 Theobroma cacao HOM05D002425 ORTHO05D002709 8.2e-06 52.8 47 61.7
TWI14G0247 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 8.2e-06 52.8 45 62.2


User provided reference genes

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