Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 2.4e-84 315.5 157 100.0
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 9.0e-68 260.4 132 99.2
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 1.3e-55 219.9 149 78.5
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.3e-53 213.4 161 72.7
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 9.1e-52 207.2 133 82.0
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 4.5e-51 204.9 142 79.6
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 6.5e-50 201.1 121 86.0
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 4.5e-43 178.3 138 70.3
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 3.2e-41 172.2 132 69.7
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.4e-36 156.8 132 62.9
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 5.3e-36 154.8 133 63.2
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.2e-32 143.7 132 58.3
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-31 140.6 132 58.3
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.8e-31 139.8 132 57.6
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 4.0e-31 138.7 101 75.2
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 5.2e-31 138.3 126 61.1
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 5.2e-31 138.3 126 61.1
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 5.2e-31 138.3 126 61.1
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 5.2e-31 138.3 126 61.1
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 5.2e-31 138.3 126 61.1
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 5.2e-31 138.3 126 61.1
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 1.5e-30 136.7 132 58.3
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.3e-29 133.7 131 59.5
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 1.3e-29 133.7 122 60.7
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.3e-29 133.7 76 86.8
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.8e-29 131.7 132 53.8
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 4.8e-29 131.7 132 58.3
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 1.1e-28 130.6 133 57.9
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.0e-26 124.0 132 57.6
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 1.7e-26 123.2 135 53.3
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 1.7e-26 123.2 135 53.3
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 5.5e-25 118.2 132 53.8
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 7.2e-25 117.9 133 52.6
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 2.7e-24 115.9 132 50.8
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 3.0e-23 112.5 94 62.8
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.0e-23 112.1 115 53.0
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 5.2e-23 111.7 94 61.7
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 6.8e-23 111.3 131 51.1
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 1.5e-22 110.2 102 58.8
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.3e-21 107.1 112 52.7
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.3e-21 107.1 137 53.3
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.7e-21 106.7 140 51.4
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 1.8e-20 103.2 132 49.2
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 5.4e-20 101.7 56 91.1
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 7.0e-20 101.3 87 58.6
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 1.6e-19 100.1 131 48.1
MD02G1049500 Malus domestica HOM05D000806 ORTHO05D002320 4.5e-19 98.6 103 57.3
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 1.7e-18 96.7 126 44.4
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 1.7e-18 96.7 126 44.4
Lalb_Chr23g0274541 Lupinus albus HOM05D000806 ORTHO05D002320 2.9e-18 95.9 100 57.0
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 3.8e-18 95.5 126 44.4
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 5.0e-18 95.1 126 44.4
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 5.0e-18 95.1 126 44.4
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.9e-17 93.2 62 83.9
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 2.5e-17 92.8 130 44.6
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.5e-17 91.7 119 44.5
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 5.5e-17 91.7 126 46.0
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 9.5e-17 90.9 69 66.7
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 4.7e-16 88.6 126 42.9
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 6.1e-16 88.2 72 59.7
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.0e-15 87.4 119 45.4
CAN.G398.12 Capsicum annuum HOM05D001133 ORTHO05D000941 3.0e-15 85.9 63 71.4
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-15 85.9 98 49.0
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 3.0e-15 85.9 132 45.5
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 4.0e-15 85.5 118 44.1
MD11G1294800 Malus domestica HOM05D000806 ORTHO05D002320 4.4e-14 82.0 88 53.4
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 5.7e-14 81.6 105 48.6
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 1.3e-13 80.5 130 46.2
Gohir.A07G163645 Gossypium hirsutum HOM05D001133 ORTHO05D000941 2.8e-13 79.3 65 55.4
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.7e-13 79.0 132 43.2
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.7e-13 79.0 132 43.2
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 4.9e-13 78.6 110 40.9
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.9e-13 78.6 58 65.5
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.1e-12 77.4 130 40.0
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.1e-12 75.5 55 67.3
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 5.4e-12 75.1 70 61.4
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 5.4e-12 75.1 70 61.4
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.9e-11 71.6 132 40.9
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.9e-11 71.6 132 40.9
CAN.G212.7 Capsicum annuum HOM05D000680 ORTHO05D002320 1.3e-10 70.5 67 59.7
Solyc02g032810.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.1e-09 67.4 41 82.9
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 1.5e-09 67.0 69 52.2
Gorai.005G127400 Gossypium raimondii HOM05D000806 ORTHO05D002320 5.6e-09 65.1 67 49.3
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 9.5e-09 64.3 131 41.2
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 7.5e-06 54.7 94 37.2


User provided reference genes

Program Settings