Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1993.4 1019 100.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1982.6 1019 99.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1939.9 1015 97.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1788.1 1014 90.3
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1701.0 1009 86.4
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1513.8 1020 76.5
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1497.3 1021 76.2
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1459.1 1010 75.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1458.0 1042 76.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1457.2 1028 73.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1455.3 1034 77.1
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1454.9 1018 74.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1003 74.6
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1443.3 1027 73.6
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1440.6 1014 74.0
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1016 73.4
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1437.2 1014 73.4
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1434.9 1020 72.5
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1432.9 1002 74.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1431.4 1018 72.8
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1429.8 1022 72.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1428.3 1037 72.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1425.2 1017 73.0
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1424.5 1014 73.2
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1027 72.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1421.4 1018 72.4
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1419.8 1024 72.4
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1005 73.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1418.7 1022 72.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1018 72.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1414.4 1012 72.3
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1015 72.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1011 72.3
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1408.7 1009 72.1
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1407.1 1002 73.4
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1005 72.4
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1021 71.2
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1021 71.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1401.7 1026 71.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1022 72.0
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1022 71.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1015 72.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1390.2 1030 71.5
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1389.0 1031 70.3
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1387.9 1012 71.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1380.2 1011 70.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 1009 70.8
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1378.6 1025 70.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 1074 69.1
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1375.9 1020 70.5
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1050 68.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1025 70.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1372.5 1001 71.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1012 70.4
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1370.5 1018 70.4
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1368.2 1021 69.7
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1014 70.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 1033 70.3
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1366.3 1011 71.1
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1026 70.2
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1021 70.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1365.1 1020 69.5
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1365.1 1026 70.2
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1363.6 1029 69.3
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1027 69.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1025 69.6
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 1003 71.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1354.0 1012 70.2
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1018 70.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1025 69.6
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1349.0 1011 69.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1349.0 1007 70.0
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1347.8 1045 68.2
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1021 69.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1340.9 1045 68.1
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1340.9 1029 70.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1027 69.1
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1032 69.1
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1337.8 967 72.2
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1020 69.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 1011 68.7
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 1028 68.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1022 68.6
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1034 67.5
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1034 67.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1063 66.1
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1005 69.4
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1020 67.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1308.1 1009 68.7
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1304.7 1030 67.3
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1304.3 1036 67.1
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1302.3 985 70.1
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1300.0 933 72.1
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 1024 67.2
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1297.7 996 69.6
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1295.4 1003 68.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1292.3 1005 68.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1291.9 1018 67.4
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1004 68.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 1000 68.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 982 69.3
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1282.3 986 68.8
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1278.8 1033 66.1
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1278.1 987 68.7
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1278.1 987 68.7
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1277.7 1010 65.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1273.1 889 74.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1267.3 888 74.2
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1250.0 1018 65.2
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 1023 65.8
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 1023 65.7
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1245.7 912 72.4
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1243.0 1029 65.5
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1236.9 1021 64.3
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1235.7 1029 64.1
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1229.5 1002 65.9
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1216.8 986 65.4
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1212.2 1019 64.1
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1207.2 1005 64.2
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1192.2 1071 62.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1182.5 1028 62.2
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1182.2 1010 63.3
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1180.6 1029 61.9
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1153.3 928 66.1
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1132.1 1001 61.2
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 1031 59.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1122.5 985 62.7
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1103.6 847 67.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.8e-300 1035.0 1026 59.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.2e-291 1005.4 905 59.7
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.5e-283 979.2 992 55.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 4.8e-271 938.3 800 65.1
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 6.3e-271 937.9 856 61.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.3e-260 903.7 722 68.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.2e-256 890.6 994 51.0
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.2e-253 880.6 746 65.7
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.1e-242 843.2 1041 47.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.6e-242 842.4 976 49.1
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.2e-238 829.3 976 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 9.2e-230 801.2 1015 46.2
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.3e-219 766.1 829 51.5
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.5e-211 740.7 816 51.5
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.2e-205 721.1 721 59.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.3e-196 690.3 653 58.7
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.8e-191 672.9 912 44.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.1e-179 634.8 856 47.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.1e-165 585.9 634 53.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.8e-161 574.3 970 38.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 6.1e-149 532.7 664 49.1
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.7e-146 523.5 626 49.8
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.4e-145 521.5 625 50.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 6.5e-143 512.7 1170 34.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 3.6e-125 453.8 380 61.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.9e-113 414.8 640 43.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.1e-112 411.4 313 70.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-105 389.0 543 43.3
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-96 359.0 235 78.7
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.6e-93 348.6 267 69.7
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.5e-86 324.7 310 56.5
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 5.7e-70 270.4 631 34.1
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.4e-67 261.2 254 59.1
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.8e-55 219.9 206 52.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.5e-51 209.1 526 30.2
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.4e-47 196.1 235 45.1
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.6e-46 191.8 169 59.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 4.4e-46 191.0 929 23.9
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.3e-45 187.2 178 52.8
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 7.7e-43 180.3 150 62.0
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.8e-37 161.8 141 58.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.1e-33 149.8 229 43.7
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.7e-32 144.4 131 55.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.4e-25 120.2 115 52.2
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 2.3e-23 115.5 96 57.3
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 2.3e-23 115.5 96 57.3
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.5e-14 86.3 85 60.0
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 5.9e-11 74.3 66 54.5
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 7.8e-11 73.9 124 41.9


User provided reference genes

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