Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 2.6e-141 505.8 337 100.0
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 7.7e-141 504.2 337 99.7
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 3.1e-134 482.3 324 99.4
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 3.2e-131 472.2 337 95.3
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 8.0e-114 414.5 348 85.9
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 2.3e-113 412.9 341 82.4
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 3.7e-111 405.6 330 87.0
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 5.8e-96 355.1 341 63.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 2.9e-95 352.8 341 64.2
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.7e-92 343.6 346 62.7
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.0e-92 342.8 341 63.9
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 8.6e-92 341.3 341 61.9
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 9.5e-91 337.8 343 62.4
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.2e-88 330.9 339 61.1
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 1.5e-88 330.5 349 60.5
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.6e-88 329.7 331 61.9
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 3.2e-86 322.8 341 66.9
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 5.4e-86 322.0 339 59.0
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 6.0e-85 318.5 347 62.0
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.5e-83 313.9 341 63.0
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 5.6e-83 312.0 343 59.5
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.6e-82 310.5 350 57.4
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 3.6e-82 309.3 339 59.3
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.6e-82 309.3 341 58.4
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.2e-82 308.5 340 59.1
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.1e-81 307.8 356 57.6
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.8e-81 307.0 342 57.3
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.8e-81 307.0 342 58.2
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.9e-81 304.7 348 56.6
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.5e-80 303.9 321 60.7
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 2.6e-80 303.1 341 59.2
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.7e-79 300.4 337 58.5
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.7e-79 300.4 346 58.4
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 8.4e-79 298.1 281 63.7
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 8.4e-79 298.1 293 61.8
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.1e-78 297.7 338 58.0
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.9e-78 297.0 330 58.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.4e-78 296.6 290 62.8
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 6.0e-77 292.0 354 57.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.3e-76 290.8 366 56.6
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.3e-76 290.8 342 57.6
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.5e-75 287.3 340 55.9
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 4.3e-75 285.8 306 58.2
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 3.6e-74 282.7 341 56.9
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 4.8e-74 282.3 393 58.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 7.6e-72 275.0 340 55.6
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.3e-71 274.2 327 55.0
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 2.2e-71 273.5 378 51.9
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.9e-71 273.1 341 54.5
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.9e-70 270.4 294 57.1
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 3.2e-70 269.6 341 55.1
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.2e-70 269.6 352 52.3
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 5.4e-70 268.9 339 60.2
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.2e-69 267.7 338 53.6
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 2.7e-69 266.5 380 59.7
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-68 264.6 372 50.5
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.0e-68 264.6 340 54.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.3e-68 264.2 289 68.9
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.7e-68 263.8 372 50.3
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 3.0e-68 263.1 336 53.9
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 3.9e-68 262.7 362 58.8
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 6.6e-68 261.9 356 54.5
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 6.6e-68 261.9 286 59.4
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 2.5e-67 260.0 327 53.8
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.3e-67 259.6 362 58.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 5.6e-67 258.8 372 57.3
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 5.6e-67 258.8 308 58.1
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.6e-66 257.3 201 72.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.8e-66 256.5 199 72.9
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.6e-66 256.1 284 57.4
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.1e-65 254.6 334 53.6
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.1e-65 253.1 340 53.2
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 4.0e-65 252.7 354 51.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.9e-65 251.9 234 63.7
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.2e-64 251.1 351 53.3
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.0e-64 250.4 339 62.5
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.6e-64 250.0 343 64.4
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 3.4e-64 249.6 201 71.6
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 3.4e-64 249.6 360 48.9
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.5e-64 249.2 199 71.4
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 5.8e-64 248.8 339 54.0
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 5.8e-64 248.8 296 56.8
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 4.9e-63 245.7 342 59.1
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 4.9e-63 245.7 342 59.1
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 4.9e-63 245.7 297 55.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.1e-62 244.6 307 52.8
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 2.4e-62 243.4 296 58.4
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 3.2e-62 243.0 325 51.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.3e-62 241.5 337 58.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.6e-61 240.7 339 51.0
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.6e-61 240.7 419 48.0
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.1e-61 240.4 346 48.0
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 4.6e-61 239.2 200 68.5
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 4.6e-61 239.2 200 68.5
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 4.6e-61 239.2 343 49.9
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 6.0e-61 238.8 332 50.9
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.8e-60 237.3 342 51.5
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 2.3e-60 236.9 282 54.3
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 5.6e-59 232.3 378 46.6
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 7.4e-59 231.9 304 52.3
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-58 230.7 336 50.6
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 5.3e-57 225.7 296 52.7
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.0e-56 223.8 304 51.0
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.6e-56 223.4 286 55.6
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-55 221.5 275 59.6
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-55 221.1 275 59.3
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.9e-54 217.2 197 66.5
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 4.2e-54 216.1 395 44.6
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.2e-53 214.5 342 47.4
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.5e-53 213.0 260 53.5
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 3.5e-53 213.0 343 55.4
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.0e-52 209.9 288 51.4
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.0e-52 209.9 275 58.5
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.9e-52 209.5 339 45.4
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 2.5e-51 206.8 290 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 3.3e-51 206.5 206 63.1
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 6.3e-50 202.2 292 58.6
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.4e-49 200.3 163 70.6
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 2.0e-48 197.2 189 61.9
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.7e-47 194.1 198 60.1
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.2e-46 189.9 193 59.1
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 3.0e-44 183.3 209 54.5
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 9.7e-43 178.3 214 55.6
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-40 171.4 147 70.7
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 4.5e-40 169.5 205 53.7
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.7e-40 168.7 336 41.1
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.5e-38 163.7 338 39.9
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.0e-35 154.1 238 45.4
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 3.7e-34 149.8 428 35.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 9.1e-33 145.2 294 43.5
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.2e-32 144.8 351 35.6
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.1e-25 120.2 191 46.1
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.2e-24 118.2 136 50.7
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 9.4e-22 108.6 203 40.9
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.2e-20 102.8 170 40.6
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.3e-18 98.2 96 63.5
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 3.1e-17 93.6 93 63.4
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.7e-15 87.8 87 60.9
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 3.4e-11 73.6 206 35.9
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 7.7e-08 62.4 136 36.0
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.9e-07 60.5 86 53.5
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 8.5e-07 58.9 59 61.0
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.1e-06 58.5 86 52.3
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.5e-06 58.2 86 52.3
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.5e-06 57.4 210 29.0
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-06 57.4 86 52.3


User provided reference genes

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