Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 4.0e-162 574.7 289 100.0
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 3.2e-151 538.5 275 98.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.6e-132 474.6 267 90.3
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 4.7e-123 444.9 283 84.5
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.4e-121 438.7 221 98.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.2e-113 413.7 308 74.0
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 6.0e-110 401.4 280 77.1
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 5.6e-108 394.8 280 76.4
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.4e-106 389.4 279 74.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.2e-105 387.1 278 75.2
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.9e-105 384.0 285 73.7
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 2.9e-104 382.5 278 75.2
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 6.4e-104 381.3 280 74.3
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 8.4e-104 380.9 223 84.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.4e-103 380.2 285 74.0
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.2e-103 378.6 272 75.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.2e-103 378.6 286 73.8
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.6e-102 376.7 284 71.8
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.1e-102 376.3 277 73.3
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.5e-102 375.6 272 73.2
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.6e-102 375.2 280 72.1
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 4.6e-102 375.2 273 72.5
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.6e-102 375.2 284 71.5
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 6.0e-102 374.8 284 71.5
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.0e-101 374.0 272 72.8
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.0e-101 374.0 284 70.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.8e-101 373.2 284 71.5
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 2.3e-101 372.9 261 73.9
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 3.9e-101 372.1 286 69.9
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 5.1e-101 371.7 282 72.3
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 5.1e-101 371.7 213 86.4
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 6.7e-101 371.3 281 71.9
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 8.7e-101 370.9 212 85.4
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 8.7e-101 370.9 282 70.9
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.5e-100 370.2 283 68.6
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.5e-100 370.2 272 73.2
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.5e-100 370.2 293 70.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.5e-100 369.4 290 69.3
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 4.3e-100 368.6 279 70.6
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 5.6e-100 368.2 282 71.6
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 9.6e-100 367.5 245 78.0
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 9.6e-100 367.5 285 70.9
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 9.6e-100 367.5 243 77.4
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.1e-99 366.3 210 86.7
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 2.1e-99 366.3 289 70.2
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.1e-99 366.3 214 84.6
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.8e-99 365.9 286 70.3
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 3.7e-99 365.5 242 78.9
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.7e-99 365.5 234 80.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 3.7e-99 365.5 268 72.4
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.7e-99 365.5 284 71.1
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 3.7e-99 365.5 280 71.8
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 4.8e-99 365.2 235 79.6
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.2e-99 364.8 214 85.0
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 8.2e-99 364.4 213 85.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.1e-98 364.0 279 69.2
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.1e-98 364.0 282 67.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.1e-98 364.0 285 69.5
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.4e-98 363.6 213 85.4
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.4e-98 363.6 291 70.1
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.4e-98 363.6 283 70.3
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.8e-98 363.2 279 69.9
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.8e-98 363.2 265 74.0
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.1e-98 362.5 286 69.9
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 4.0e-98 362.1 283 70.3
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 5.3e-98 361.7 225 79.6
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 6.9e-98 361.3 212 84.4
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.0e-98 360.9 274 71.5
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.5e-97 360.1 279 67.7
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.5e-97 360.1 204 85.3
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.5e-97 360.1 223 81.2
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 2.0e-97 359.8 219 82.6
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.0e-97 359.8 287 67.9
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.0e-97 359.8 203 87.7
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.6e-97 359.4 257 73.2
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.4e-97 359.0 215 83.7
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.4e-97 359.0 283 70.3
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 4.5e-97 358.6 292 66.1
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 4.5e-97 358.6 228 78.9
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 5.8e-97 358.2 219 80.8
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 7.6e-97 357.8 209 84.7
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.0e-96 357.5 281 70.8
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.0e-96 357.5 209 84.7
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.3e-96 357.1 217 81.6
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.7e-96 356.7 214 82.7
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-96 356.7 201 86.1
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.2e-96 356.3 259 70.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 2.2e-96 356.3 210 82.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.8e-96 355.5 219 80.4
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 4.9e-96 355.1 285 68.4
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.4e-95 353.6 280 67.5
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.9e-95 353.2 275 70.2
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.9e-95 353.2 212 82.5
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 3.2e-95 352.4 285 67.0
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 4.2e-95 352.1 284 69.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 7.1e-95 351.3 277 69.7
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.3e-95 350.9 277 69.7
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.6e-94 350.1 258 72.9
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.5e-94 349.0 200 83.5
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.5e-94 349.0 203 85.7
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 6.0e-94 348.2 198 85.9
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 7.9e-94 347.8 200 83.0
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-93 347.4 302 63.9
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 5.1e-93 345.1 209 84.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 6.7e-93 344.7 215 79.5
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.5e-92 343.6 198 85.4
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 2.5e-92 342.8 282 64.9
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.3e-92 342.4 200 82.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.3e-91 340.5 215 76.7
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.3e-91 340.5 200 81.5
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 8.2e-91 337.8 297 65.0
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 3.1e-90 335.9 198 82.3
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 9.0e-90 334.3 198 82.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.0e-88 328.6 322 59.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 8.5e-88 327.8 275 68.0
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 7.2e-87 324.7 237 71.7
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 7.9e-86 321.2 196 80.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 8.8e-85 317.8 206 77.7
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 7.4e-84 314.7 166 92.2
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.2e-83 313.2 275 65.8
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 4.1e-82 308.9 249 69.5
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 5.3e-82 308.5 232 69.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.3e-80 303.9 284 65.5
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.2e-80 303.1 317 55.8
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 5.0e-80 302.0 198 76.3
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 5.5e-79 298.5 232 69.0
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 6.1e-78 295.0 166 87.3
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 6.1e-78 295.0 213 71.8
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 7.9e-78 294.7 211 69.2
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.0e-77 294.3 160 88.1
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.4e-76 288.1 239 64.9
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.7e-75 287.0 166 82.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.8e-74 283.5 275 62.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.9e-72 276.2 288 56.2
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.4e-71 273.9 230 66.1
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-71 273.9 285 58.9
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.2e-71 272.3 301 55.5
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 4.7e-70 268.9 148 87.2
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 4.7e-70 268.9 203 69.5
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-67 260.4 159 82.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.6e-65 253.1 229 61.1
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.3e-64 250.8 214 66.4
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.2e-63 246.1 149 81.9
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 4.7e-62 242.3 169 74.0
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.3e-61 240.0 210 63.8
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.5e-60 237.3 167 74.9
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 6.5e-56 221.9 149 70.5
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.5e-55 220.7 200 52.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-50 204.5 190 62.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.1e-50 203.0 120 82.5
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 6.6e-48 195.3 178 59.6
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 2.0e-44 183.7 316 40.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.5e-39 166.8 145 60.7
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 5.8e-36 155.6 188 42.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 5.4e-34 149.1 200 40.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.7e-32 144.1 222 39.2
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.9e-31 140.6 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.1e-22 110.5 62 82.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-21 108.2 62 80.6
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.2e-20 104.8 140 51.4
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 2.4e-18 97.1 59 79.7
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.4e-12 76.6 83 51.8
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 4.9e-11 72.8 118 40.7
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.1e-10 71.6 36 91.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.4e-10 71.2 40 82.5
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.4e-10 70.5 155 38.7
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.6e-09 66.2 32 93.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.1e-08 62.8 51 62.7
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.6e-08 62.4 42 71.4
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 8.7e-08 62.0 37 75.7
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.3e-07 59.7 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 7.3e-07 58.9 31 83.9


User provided reference genes

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