Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.6e-149 532.7 259 100.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.0e-145 520.0 259 98.5
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.4e-142 508.8 259 96.1
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.6e-125 453.0 265 84.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 6.6e-124 447.6 265 81.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.2e-106 390.2 258 72.9
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.6e-106 389.8 258 72.1
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 3.1e-105 385.6 259 71.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 8.9e-105 384.0 259 71.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-104 383.6 258 70.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 3.4e-104 382.1 258 71.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 4.4e-104 381.7 260 71.9
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.3e-103 380.2 260 69.2
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-103 380.2 257 70.0
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.7e-103 379.8 258 70.2
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 2.9e-103 379.0 258 70.5
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 4.9e-103 378.3 260 69.6
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.1e-102 377.1 259 71.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.4e-102 375.9 258 69.8
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.2e-102 375.6 258 68.6
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 5.4e-102 374.8 260 68.8
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 7.1e-102 374.4 260 68.8
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 9.2e-102 374.0 258 69.8
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.2e-102 374.0 260 69.6
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-101 373.6 259 69.9
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.6e-101 373.2 258 69.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.7e-101 372.5 258 68.6
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.5e-101 372.1 258 69.4
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 6.0e-101 371.3 254 70.9
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.0e-100 370.5 258 69.4
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.0e-100 370.5 277 68.2
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.0e-100 370.5 261 70.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.7e-100 369.8 268 70.5
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.3e-100 369.4 257 69.3
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 5.1e-100 368.2 264 67.4
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.5e-99 365.9 272 67.6
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 2.5e-99 365.9 258 68.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.3e-99 365.5 259 67.2
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 5.6e-99 364.8 256 70.7
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 7.3e-99 364.4 258 68.6
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.2e-98 363.6 259 67.2
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.6e-98 363.2 271 68.3
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.1e-98 362.8 257 67.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 2.8e-98 362.5 258 67.1
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 4.7e-98 361.7 258 68.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.1e-97 360.5 253 69.2
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-97 358.6 258 67.4
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.0e-97 358.6 258 67.8
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 4.0e-97 358.6 263 67.3
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 6.8e-97 357.8 258 68.6
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 6.8e-97 357.8 258 66.3
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 8.9e-97 357.5 253 69.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 8.9e-97 357.5 234 74.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.2e-96 357.1 263 66.5
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.5e-96 356.7 258 67.1
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.5e-96 356.7 260 65.8
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-96 356.3 253 68.4
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.0e-96 356.3 253 68.4
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.6e-96 355.9 258 68.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 2.6e-96 355.9 258 67.1
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.6e-96 355.9 258 67.1
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 4.4e-96 355.1 260 68.8
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 7.6e-96 354.4 261 65.5
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.9e-95 352.4 257 66.9
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.8e-95 352.1 258 66.7
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 3.8e-95 352.1 256 67.6
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 4.9e-95 351.7 259 67.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 6.4e-95 351.3 260 68.1
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 8.4e-95 350.9 259 65.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-94 350.5 258 67.4
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.4e-94 350.1 258 67.4
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.4e-94 350.1 257 65.4
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.4e-94 350.1 268 66.8
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.9e-94 349.7 258 65.9
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-94 349.4 258 67.1
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-94 349.4 258 67.1
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.4e-94 349.4 257 66.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 4.2e-94 348.6 275 65.1
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 7.1e-94 347.8 259 67.2
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 7.1e-94 347.8 258 64.0
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 9.2e-94 347.4 258 66.7
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 9.2e-94 347.4 267 66.7
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 9.2e-94 347.4 259 63.7
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-93 347.1 256 67.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.7e-93 345.9 258 66.3
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 6.0e-93 344.7 258 66.7
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 6.0e-93 344.7 257 63.8
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.3e-92 343.6 263 63.5
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.7e-92 343.2 258 65.5
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.0e-92 342.4 239 69.9
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 3.0e-92 342.4 259 65.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.9e-92 342.0 261 65.9
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 5.1e-92 341.7 252 66.3
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 7.3e-91 337.8 258 62.4
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 9.6e-91 337.4 257 63.4
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.6e-90 336.7 258 62.8
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.6e-90 336.7 258 63.2
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.8e-90 335.9 257 63.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 6.2e-90 334.7 293 58.7
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-89 334.0 258 62.8
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 9.0e-89 330.9 318 54.1
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.9e-86 323.2 271 60.1
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.2e-86 322.4 258 62.4
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.7e-85 319.3 258 61.6
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-85 318.5 362 52.5
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 6.0e-85 318.2 257 61.5
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 7.8e-85 317.8 257 61.1
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.7e-84 316.6 261 60.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.6e-84 314.7 213 70.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.9e-83 313.2 219 67.1
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.5e-83 312.8 213 69.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.6e-82 308.9 218 66.5
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.1e-81 305.8 259 59.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 4.0e-81 305.4 262 61.5
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 4.5e-80 302.0 213 66.2
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.5e-80 302.0 213 68.1
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 6.4e-79 298.1 214 65.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.3e-76 290.4 199 71.4
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.3e-76 290.4 197 73.1
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-76 290.4 263 59.7
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 3.9e-76 288.9 243 58.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.1e-74 283.1 273 52.4
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-74 282.7 197 70.6
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 5.3e-73 278.5 192 70.3
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 6.9e-73 278.1 195 68.2
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.2e-72 277.3 258 56.6
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 2.0e-72 276.6 182 76.4
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.2e-71 273.1 206 67.5
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.2e-70 269.2 235 54.9
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.9e-68 262.3 232 55.2
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.4e-65 253.8 255 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 4.0e-65 252.3 234 53.4
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.2e-64 250.8 172 73.8
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 2.2e-63 246.5 227 55.5
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.4e-62 243.8 181 63.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.9e-62 243.4 312 46.2
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.0e-60 237.7 134 82.1
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.3e-58 228.4 134 79.9
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.4e-54 217.2 234 47.9
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.8e-47 192.6 218 49.1
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-46 189.9 181 55.2
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.6e-45 187.2 157 59.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 4.7e-45 185.7 130 66.9
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.6e-43 179.9 134 66.4
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.3e-43 179.5 124 75.0
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.3e-42 177.6 179 51.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 8.2e-42 174.9 103 76.7
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.4e-38 164.1 255 36.9
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 2.4e-33 146.7 308 33.1
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 8.5e-31 138.3 98 67.3
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 8.8e-28 128.3 272 31.2
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-27 127.1 173 41.6
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 7.7e-24 115.2 170 45.3
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.7e-24 115.2 147 41.5
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.9e-23 113.2 98 51.0
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 4.0e-20 102.8 78 59.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.5e-16 89.4 119 41.2
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.3e-15 87.0 60 65.0
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.1e-14 84.7 79 48.1
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 3.3e-14 83.2 55 76.4
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 3.3e-14 83.2 55 76.4
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 4.4e-11 72.8 50 60.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 8.3e-10 68.6 55 60.0
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.0e-09 65.5 43 69.8
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 5.9e-08 62.4 50 60.0


User provided reference genes

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