Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 1.4e-137 493.4 352 100.0
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 4.6e-136 488.4 352 98.9
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 4.4e-107 392.1 350 73.1
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.7e-103 380.2 355 83.7
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 5.6e-102 375.2 351 81.5
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 2.1e-101 373.2 355 82.0
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.1e-100 370.9 352 80.4
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 5.3e-100 368.6 349 82.2
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 2.6e-99 366.3 355 76.9
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 1.4e-97 360.5 345 83.2
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.4e-97 359.8 350 81.1
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 4.2e-97 359.0 350 80.3
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 2.1e-96 356.7 351 80.1
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.3e-95 354.0 349 80.8
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 3.0e-95 352.8 348 72.1
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 5.1e-95 352.1 353 70.5
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 8.7e-95 351.3 350 78.6
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 1.1e-94 350.9 347 72.3
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 1.1e-94 350.9 352 79.3
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 1.1e-94 350.9 349 78.2
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.5e-94 350.5 350 77.7
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 1.9e-94 350.1 344 71.5
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 3.3e-94 349.4 342 80.4
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 5.6e-94 348.6 347 79.8
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 1.6e-93 347.1 338 81.4
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.6e-93 347.1 342 80.7
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 1.6e-93 347.1 341 79.2
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.8e-93 346.3 349 80.5
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 2.8e-93 346.3 339 80.8
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 3.7e-93 345.9 339 80.8
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 4.8e-93 345.5 352 77.8
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 4.8e-93 345.5 344 79.1
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 8.1e-93 344.7 351 79.8
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.1e-92 344.4 346 80.6
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 1.8e-92 343.6 346 80.6
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 1.8e-92 343.6 349 79.1
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 2.4e-92 343.2 349 79.1
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 3.1e-92 342.8 346 79.2
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 3.1e-92 342.8 350 78.6
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 5.3e-92 342.0 351 78.3
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 6.9e-92 341.7 357 78.7
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 6.9e-92 341.7 346 79.5
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 1.5e-91 340.5 351 78.3
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 2.0e-91 340.1 342 79.5
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 2.6e-91 339.7 340 75.0
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 4.5e-91 339.0 339 79.6
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 2.2e-90 336.7 342 79.2
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 2.2e-90 336.7 339 79.9
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 2.9e-90 336.3 344 76.7
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 2.9e-90 336.3 340 79.1
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 6.5e-90 335.1 353 78.8
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 6.5e-90 335.1 348 78.4
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 1.4e-89 334.0 346 78.6
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 3.2e-89 332.8 350 78.3
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 3.2e-89 332.8 358 69.0
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 9.3e-89 331.3 347 70.0
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 3.0e-87 326.2 369 62.1
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 5.1e-87 325.5 348 70.7
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.1e-86 324.3 351 75.2
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 3.3e-86 322.8 350 76.0
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 3.3e-86 322.8 356 75.3
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 3.3e-86 322.8 356 75.3
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 3.3e-86 322.8 342 74.3
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 5.7e-86 322.0 344 73.3
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 9.6e-86 321.2 347 76.1
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 1.3e-85 320.9 272 96.3
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 2.8e-85 319.7 342 74.0
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.3e-85 318.5 349 64.5
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 6.3e-85 318.5 341 68.6
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 8.2e-85 318.2 349 72.8
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.1e-84 316.2 349 64.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 4.1e-84 315.8 327 76.8
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 4.1e-84 315.8 349 64.2
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 2.6e-83 313.2 340 67.1
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.5e-83 312.4 346 71.4
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 5.9e-83 312.0 381 71.4
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.3e-82 310.8 348 74.4
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 2.2e-82 310.1 332 74.7
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 3.8e-82 309.3 349 75.9
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.5e-82 308.5 343 73.5
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 5.5e-81 305.4 351 46.2
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 7.2e-81 305.1 359 64.6
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 3.0e-79 299.7 348 73.9
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 3.9e-79 299.3 348 73.6
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 6.7e-79 298.5 339 50.4
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 6.7e-79 298.5 348 73.6
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 6.7e-79 298.5 348 73.6
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 2.5e-78 296.6 348 73.3
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 3.3e-78 296.2 358 62.3
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 6.3e-77 292.0 345 75.1
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 8.2e-77 291.6 349 62.2
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 1.4e-76 290.8 349 72.8
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 6.9e-76 288.5 347 72.6
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 1.7e-74 283.9 339 70.5
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 8.5e-74 281.6 350 72.3
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 9.4e-73 278.1 351 71.8
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.0e-70 270.4 347 69.2
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 2.2e-69 266.9 276 80.8
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 8.2e-69 265.0 276 85.1
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 6.9e-68 261.9 482 55.6
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 9.1e-68 261.5 339 62.2
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 5.1e-63 245.7 348 68.4
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 5.7e-62 242.3 343 58.3
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 1.3e-61 241.1 341 60.4
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 4.5e-59 232.6 345 66.1
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.3e-58 231.1 386 52.8
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.5e-57 226.9 343 65.0
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 1.2e-56 224.6 358 52.2
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 4.7e-56 222.6 342 50.9
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 6.1e-56 222.2 209 88.0
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 8.0e-56 221.9 286 43.7
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 2.3e-55 220.3 349 57.3
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 3.0e-55 219.9 348 66.1
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 1.1e-54 218.0 349 57.0
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 9.7e-54 214.9 349 56.2
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 9.7e-54 214.9 349 56.2
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 8.2e-53 211.8 360 51.4
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 7.7e-51 205.3 355 37.2
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 6.8e-47 192.2 359 50.4
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.2e-46 191.4 277 57.4
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.3e-45 188.0 114 78.1
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 7.0e-44 182.2 346 52.3
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 3.8e-42 176.4 238 67.6
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 1.1e-41 174.9 114 72.8
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 2.7e-40 170.2 110 71.8
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 1.5e-38 164.5 107 71.0
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.4e-36 157.1 102 75.5
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 5.4e-36 156.0 102 69.6
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 1.5e-33 147.9 110 63.6
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.9e-33 147.5 343 35.9
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 7.3e-33 145.6 302 53.0
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 8.0e-32 142.1 103 63.1
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.9e-29 132.9 78 76.9
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 5.9e-27 125.9 88 65.9
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 1.6e-24 117.9 470 36.0
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 9.2e-20 102.1 271 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 1.6e-19 101.3 155 38.7
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.5e-17 94.7 72 63.9
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.7e-16 89.7 102 51.0
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 4.7e-16 89.7 79 54.4
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 1.4e-15 88.2 99 46.5
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.1e-15 87.0 107 50.5
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 8.9e-15 85.5 48 77.1
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 7.5e-14 82.4 132 68.2
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 9.8e-14 82.0 107 48.6
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 3.7e-13 80.1 57 63.2
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 78.6 116 39.7
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 3.9e-10 70.1 46 71.7
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 3.9e-10 70.1 46 71.7
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 3.9e-10 70.1 44 77.3
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 8.6e-10 68.9 35 85.7
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 2.5e-09 67.4 337 40.1
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.2e-06 58.5 125 31.2
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 2.0e-06 57.8 114 36.0
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 2.6e-06 57.4 114 36.0
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 2.6e-06 57.4 124 31.5
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.6e-06 57.4 96 34.4
arahy.Tifrunner.gnm1.ann1.14B96B Arachis hypogaea HOM05D004768 ORTHO05D005812 4.4e-06 56.6 44 59.1
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 5.8e-06 56.2 110 35.5
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 5.8e-06 56.2 117 34.2
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 9.9e-06 55.5 114 36.8
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 9.9e-06 55.5 117 35.9
Solyc12g088630.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 9.9e-06 55.5 116 32.8
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 9.9e-06 55.5 113 32.7


User provided reference genes

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