Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-73 279.6 145 100.0
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.3e-73 279.6 145 100.0
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.0e-73 277.7 145 99.3
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.4e-69 265.0 145 95.9
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.4e-69 264.6 145 95.9
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.3e-60 236.5 145 84.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.4e-59 232.3 145 81.4
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.1e-59 231.5 145 82.1
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 7.3e-56 220.7 155 75.5
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.1e-55 219.2 155 73.5
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.8e-55 218.8 155 74.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.7e-55 218.0 155 74.2
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 8.1e-55 217.2 155 74.8
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 8.1e-55 217.2 155 74.8
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.4e-54 216.5 155 73.5
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.8e-54 216.1 155 74.2
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.8e-54 216.1 155 72.3
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.4e-54 215.7 155 72.3
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 6.8e-54 214.2 144 77.1
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 8.9e-54 213.8 155 73.5
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.2e-53 213.4 155 73.5
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.5e-53 213.0 155 73.5
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.5e-53 213.0 157 73.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.5e-53 213.0 155 72.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.0e-53 212.6 155 72.9
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.6e-53 212.2 155 72.9
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 4.4e-53 211.5 155 72.9
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 5.8e-53 211.1 155 72.3
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 2.9e-52 208.8 155 72.3
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.9e-52 208.0 154 73.4
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.9e-52 208.0 145 78.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 4.9e-52 208.0 155 71.0
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 8.4e-52 207.2 154 70.1
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 8.4e-52 207.2 167 71.3
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.9e-51 206.1 154 72.1
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.9e-51 206.1 156 71.8
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.2e-51 205.3 145 78.6
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 4.1e-51 204.9 154 69.5
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.1e-51 204.9 157 69.4
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.4e-51 204.5 144 79.9
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 7.1e-51 204.1 155 69.7
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 7.1e-51 204.1 156 72.4
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 9.2e-51 203.8 145 77.2
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.1e-50 202.6 155 71.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 2.1e-50 202.6 145 73.1
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.1e-50 202.6 154 68.8
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.7e-50 202.2 155 71.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.5e-50 201.8 156 71.2
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 7.8e-50 200.7 145 77.2
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 7.8e-50 200.7 154 70.8
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.7e-49 199.5 156 69.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.3e-49 199.1 155 70.3
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-49 199.1 156 68.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.3e-49 199.1 156 68.6
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 3.0e-49 198.7 145 77.2
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 3.9e-49 198.4 141 75.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.6e-49 197.6 156 67.9
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.5e-48 195.7 155 67.1
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.5e-48 195.7 156 67.9
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 3.3e-48 195.3 147 71.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.6e-47 193.0 170 65.3
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-46 190.3 155 65.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-46 190.3 145 73.8
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.4e-46 189.9 151 68.9
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 3.1e-46 188.7 146 71.2
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 6.9e-46 187.6 155 63.9
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.5e-45 186.4 155 66.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.6e-45 185.7 144 70.8
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 9.9e-45 183.7 158 64.6
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.2e-44 182.6 160 62.5
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 4.9e-44 181.4 199 55.8
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.4e-44 181.0 152 66.4
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.4e-43 179.1 155 63.2
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.4e-43 179.1 155 66.5
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.2e-43 178.7 146 67.8
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 5.4e-43 177.9 155 62.6
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 9.3e-43 177.2 155 65.8
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 9.3e-43 177.2 220 49.1
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.1e-42 176.0 153 64.7
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 6.0e-42 174.5 153 63.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.8e-42 174.1 157 61.1
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 7.8e-42 174.1 149 66.4
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.0e-41 173.7 152 67.1
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.0e-41 172.2 151 62.9
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.9e-40 169.5 155 58.7
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 4.3e-40 168.3 128 71.9
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.3e-40 168.3 155 58.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 5.6e-40 167.9 155 61.9
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 5.6e-40 167.9 153 62.1
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.6e-40 167.2 153 59.5
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 9.6e-40 167.2 155 57.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.8e-39 165.6 153 60.8
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.8e-39 164.9 153 58.8
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.8e-39 164.9 153 58.8
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 6.2e-39 164.5 147 62.6
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 8.1e-39 164.1 99 83.8
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.4e-38 163.3 154 60.4
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.8e-38 162.9 161 56.5
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.8e-38 162.9 151 64.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.4e-38 162.5 154 61.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 3.1e-38 162.2 151 58.9
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.1e-38 162.2 154 59.7
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 5.3e-38 161.4 155 61.3
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.9e-38 161.0 154 55.8
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.2e-37 160.2 150 58.7
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.2e-37 160.2 154 60.4
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.5e-37 159.8 153 60.1
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.0e-37 159.5 122 71.3
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.4e-37 158.7 147 62.6
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 4.5e-37 158.3 155 58.7
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 9.9e-37 157.1 153 56.2
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 9.9e-37 157.1 155 56.1
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.2e-36 156.0 182 54.4
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.9e-36 155.6 155 52.9
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.9e-36 154.8 152 57.9
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 8.4e-36 154.1 93 79.6
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-35 153.7 151 57.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.4e-35 153.3 155 56.1
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 3.2e-35 152.1 151 55.6
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.2e-35 152.1 267 40.8
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.4e-35 151.4 150 58.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 5.4e-35 151.4 150 58.7
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.4e-35 151.4 150 58.7
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 9.3e-35 150.6 146 58.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 9.3e-35 150.6 157 55.4
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.3e-35 150.6 93 78.5
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.2e-34 150.2 151 56.3
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 2.1e-34 149.4 180 53.3
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.1e-34 149.4 155 53.5
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.5e-34 148.7 114 69.3
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.6e-34 148.3 144 58.3
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.6e-34 148.3 144 58.3
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 7.9e-34 147.5 129 64.3
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.3e-33 146.0 150 55.3
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 5.1e-33 144.8 150 53.3
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 6.7e-33 144.4 159 56.0
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.7e-33 144.1 95 80.0
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.9e-32 142.9 150 54.0
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 5.6e-32 141.4 117 64.1
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 7.4e-32 141.0 75 97.3
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.3e-31 140.2 153 53.6
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 3.7e-31 138.7 96 71.9
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 8.1e-31 137.5 145 56.6
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.4e-30 136.7 100 69.0
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.1e-30 135.6 153 52.3
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.9e-30 134.4 116 62.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.0e-29 132.9 104 70.2
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 3.4e-29 132.1 103 65.0
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 4.5e-29 131.7 141 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.8e-29 131.3 144 53.5
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.8e-29 131.3 101 69.3
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 9.9e-29 130.6 141 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.9e-28 128.3 148 50.7
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.4e-27 125.9 94 69.1
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.2e-27 125.6 93 69.9
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.5e-27 124.8 122 60.7
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.2e-26 123.6 122 61.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.1e-25 118.2 92 65.2
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.1e-24 117.1 155 45.2
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.9e-24 116.3 156 44.2
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.2e-23 111.3 124 52.4
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.5e-21 106.7 145 50.3
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 7.1e-19 97.8 167 41.9
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.1e-18 96.3 71 66.2
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 5.1e-17 91.7 85 52.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.7e-17 90.9 89 58.4
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-16 90.5 89 58.4
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 4.8e-15 85.1 89 58.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.8e-14 83.2 61 67.2
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 7.7e-13 77.8 52 75.0
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 4.2e-11 72.0 41 80.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.4e-11 70.9 63 52.4
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 3.6e-10 68.9 45 71.1
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.6e-10 68.9 63 52.4
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.1e-10 68.2 67 47.8
CAN.G215.18 Capsicum annuum HOM05D004104 ORTHO05D004755 3.9e-09 65.5 56 67.9
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 1.5e-08 63.5 63 52.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.0e-08 63.2 85 43.5
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.8e-07 59.3 62 54.8
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.7e-07 58.9 91 41.8


User provided reference genes

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