Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 6.1e-136 487.6 274 100.0
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 3.3e-134 481.9 274 97.8
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 1.1e-132 476.9 274 97.1
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 4.0e-103 378.6 275 73.5
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 8.0e-96 354.4 253 73.9
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 1.7e-85 320.1 218 83.9
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 6.6e-82 308.1 253 66.8
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 2.8e-80 302.8 277 57.8
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 5.8e-78 295.0 279 57.3
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 4.1e-76 288.9 277 54.2
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 7.0e-76 288.1 275 56.7
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 1.3e-74 283.9 279 54.8
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.8e-72 276.2 275 54.5
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 6.2e-72 275.0 267 54.3
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 6.8e-71 271.6 277 51.3
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 8.9e-71 271.2 274 52.9
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 4.4e-70 268.9 273 53.5
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 1.3e-69 267.3 275 57.5
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 2.2e-69 266.5 275 52.4
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 1.1e-68 264.2 263 53.6
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 2.4e-68 263.1 279 53.0
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 5.4e-68 261.9 263 51.3
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 4.6e-67 258.8 281 52.0
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 6.0e-67 258.5 269 52.0
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 2.3e-66 256.5 279 51.6
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 3.0e-66 256.1 275 52.7
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 6.6e-66 255.0 264 52.3
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 2.8e-64 249.6 268 50.4
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 1.1e-63 247.7 273 49.1
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 1.4e-63 247.3 265 51.7
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 1.4e-63 247.3 257 52.9
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 2.4e-63 246.5 260 50.8
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 8.9e-63 244.6 264 50.4
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 1.5e-62 243.8 274 50.0
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 1.5e-62 243.8 270 48.5
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 1.5e-62 243.8 266 49.6
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 1.5e-62 243.8 269 46.8
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 2.0e-62 243.4 271 48.7
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 5.8e-62 241.9 269 49.1
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 1.3e-61 240.7 230 55.7
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 2.2e-61 240.0 267 47.9
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 2.9e-61 239.6 261 51.7
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 2.9e-61 239.6 268 47.4
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 1.9e-60 236.9 269 47.6
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 3.2e-60 236.1 269 47.2
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 9.2e-60 234.6 266 48.5
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 1.6e-59 233.8 279 48.4
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 1.6e-59 233.8 266 47.7
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 3.5e-59 232.6 269 46.8
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 3.5e-59 232.6 281 48.0
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 4.6e-59 232.3 278 49.3
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 1.7e-58 230.3 278 48.9
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 3.0e-58 229.6 223 55.2
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 5.1e-58 228.8 284 44.4
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 6.6e-58 228.4 267 47.6
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 6.6e-58 228.4 277 48.0
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 8.6e-58 228.0 260 48.1
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 1.5e-57 227.3 265 47.5
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 1.9e-57 226.9 260 48.8
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 2.8e-56 223.0 295 43.4
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 1.1e-55 221.1 266 45.5
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 4.0e-55 219.2 260 46.2
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 5.2e-55 218.8 271 45.4
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 6.9e-55 218.4 276 44.2
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 1.2e-54 217.6 271 46.1
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 4.4e-54 215.7 215 55.3
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 7.6e-54 214.9 255 46.7
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 1.3e-53 214.2 270 45.2
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 1.3e-53 214.2 269 44.2
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 1.7e-53 213.8 272 43.8
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 1.7e-53 213.8 262 43.5
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 2.2e-53 213.4 207 55.1
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 4.9e-53 212.2 271 47.2
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 1.9e-52 210.3 273 46.2
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 2.4e-52 209.9 290 42.4
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 7.1e-52 208.4 249 45.4
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 4.6e-51 205.7 264 45.5
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 6.6e-50 201.8 184 58.7
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 2.8e-48 196.4 231 50.2
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 8.1e-48 194.9 197 52.3
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 6.9e-47 191.8 277 41.2
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 4.5e-46 189.1 261 41.4
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 5.8e-46 188.7 195 53.3
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 1.3e-45 187.6 274 39.8
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 3.8e-45 186.0 211 48.8
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 8.7e-42 174.9 195 47.7
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 8.7e-42 174.9 190 49.5
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 8.7e-42 174.9 258 40.3
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 2.1e-40 170.2 220 42.7
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 3.1e-39 166.4 233 41.6
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 5.3e-39 165.6 222 42.8
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 1.4e-36 157.5 173 47.4
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 1.9e-36 157.1 178 46.1
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.3e-32 144.4 171 48.5
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 4.0e-31 139.4 137 57.7
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 5.5e-20 102.4 250 34.0
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 5.1e-18 95.9 103 44.7
SalBow4G3151 Salvia bowleyana HOM05D007546 ORTHO05D009542 6.5e-13 79.0 56 67.9
SalBow8G3203 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.4e-12 77.8 56 67.9
SalBow1G5735 Salvia bowleyana HOM05D007546 ORTHO05D009542 5.1e-10 69.3 56 64.3
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 5.7e-09 65.9 56 62.5
SalBow1G3448 Salvia bowleyana HOM05D007546 ORTHO05D009542 6.9e-07 58.9 45 64.4


User provided reference genes

Program Settings