Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g055740.1 Solanum lycopersicum HOM05D001129 ORTHO05D003814 3.4e-35 151.0 70 100.0
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 8.2e-13 76.6 34 94.1
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 8.2e-13 76.6 34 94.1
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 4.1e-12 74.3 34 88.2
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 4.1e-12 74.3 34 91.2
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 4.1e-12 74.3 34 91.2
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 5.3e-12 73.9 34 88.2
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 7.0e-12 73.6 34 91.2
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 1.6e-11 72.4 34 88.2
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 2.6e-11 71.6 34 88.2
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.5e-11 71.2 34 88.2
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.5e-11 71.2 34 88.2
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 3.5e-11 71.2 33 90.9
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 3.5e-11 71.2 34 85.3
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 4.5e-11 70.9 34 88.2
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 4.5e-11 70.9 34 85.3
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 4.5e-11 70.9 34 85.3
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 4.5e-11 70.9 34 88.2
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 4.5e-11 70.9 34 85.3
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 4.5e-11 70.9 34 88.2
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 5.9e-11 70.5 34 88.2
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 7.7e-11 70.1 34 85.3
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 1.0e-10 69.7 34 85.3
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 1.7e-10 68.9 34 85.3
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.7e-10 68.9 34 79.4
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.2e-10 68.6 34 82.4
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.2e-10 68.6 34 82.4
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.2e-10 68.6 34 85.3
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 2.2e-10 68.6 34 82.4
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 2.2e-10 68.6 34 82.4
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 82.4
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 85.3
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 79.4
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 79.4
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 79.4
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 82.4
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 82.4
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 82.4
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 79.4
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 2.9e-10 68.2 34 85.3
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 3.8e-10 67.8 34 82.4
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 82.4
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 79.4
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 79.4
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 79.4
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 82.4
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 82.4
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 5.0e-10 67.4 34 82.4
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 6.5e-10 67.0 34 79.4
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 6.5e-10 67.0 34 79.4
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 6.5e-10 67.0 34 85.3
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 6.5e-10 67.0 34 79.4
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 6.5e-10 67.0 34 82.4
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 8.5e-10 66.6 34 76.5
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 8.5e-10 66.6 34 82.4
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 8.5e-10 66.6 34 82.4
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.1e-09 66.2 34 79.4
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 1.5e-09 65.9 34 79.4
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.5e-09 65.9 34 79.4
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.5e-09 65.9 34 82.4
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 79.4
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 79.4
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 79.4
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.9e-09 65.5 34 79.4
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 79.4
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 79.4
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 79.4
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 1.9e-09 65.5 34 76.5
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 2.5e-09 65.1 34 76.5
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 2.5e-09 65.1 34 73.5
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 3.2e-09 64.7 34 76.5
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 3.2e-09 64.7 34 76.5
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 3.2e-09 64.7 34 79.4
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 4.2e-09 64.3 34 76.5
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 4.2e-09 64.3 34 76.5
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.5e-09 63.9 34 76.5
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 5.5e-09 63.9 34 76.5
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 5.5e-09 63.9 34 76.5
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 5.5e-09 63.9 34 76.5
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 5.5e-09 63.9 34 73.5
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 5.5e-09 63.9 34 76.5
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 7.2e-09 63.5 33 78.8
SEGI_13924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 7.2e-09 63.5 34 76.5
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 9.4e-09 63.2 34 76.5
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 9.4e-09 63.2 34 73.5
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 9.4e-09 63.2 34 73.5
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 1.2e-08 62.8 34 79.4
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.2e-08 62.8 34 76.5
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-08 61.2 34 76.5
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-08 61.2 34 76.5
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 4.7e-08 60.8 33 75.8
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 6.1e-08 60.5 34 73.5
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 8.0e-08 60.1 30 80.0
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.4e-07 59.3 34 73.5
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-07 59.3 34 70.6
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.8e-07 58.9 34 73.5
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.8e-07 58.9 34 73.5
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 3.0e-07 58.2 34 73.5
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 3.0e-07 58.2 34 70.6
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 5.2e-07 57.4 34 67.6
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 5.2e-07 57.4 34 67.6
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 1.2e-06 56.2 34 64.7
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.5e-06 55.8 34 67.6
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 3.3e-06 54.7 34 61.8
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.7e-06 53.9 34 67.6
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 7.5e-06 53.5 34 61.8
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.5e-06 53.5 31 71.0
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 7.5e-06 53.5 34 67.6
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 9.7e-06 53.1 34 67.6
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.7e-06 53.1 34 67.6
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.7e-06 53.1 34 67.6


User provided reference genes

Program Settings