Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.4e-59 229.9 113 100.0
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.8e-49 199.1 106 91.5
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-45 186.4 104 89.4
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-45 186.4 104 89.4
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-45 186.4 104 89.4
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-45 186.4 104 89.4
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.3e-41 172.2 108 82.4
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 4.0e-41 171.4 110 81.8
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 4.0e-41 171.4 110 81.8
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 8.8e-41 170.2 106 81.1
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.5e-40 169.5 89 93.3
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.7e-39 166.0 110 80.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-39 165.2 107 80.4
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-39 165.2 107 80.4
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-39 165.2 107 80.4
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 3.7e-39 164.9 107 81.3
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.7e-39 164.9 89 91.0
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 2.4e-38 162.2 107 81.3
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 4.1e-38 161.4 109 78.9
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-37 159.8 113 72.6
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 1.6e-37 159.5 107 78.5
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.1e-35 153.3 106 77.4
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 5.5e-35 151.0 107 73.8
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 5.5e-35 151.0 112 72.3
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 9.5e-35 150.2 107 78.5
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.2e-34 149.8 107 75.7
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.2e-34 149.8 107 75.7
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.2e-34 149.8 110 75.5
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.8e-34 148.7 107 73.8
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.8e-34 148.7 107 73.8
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 4.7e-34 147.9 106 76.4
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.8e-33 146.0 106 75.5
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.3e-33 145.6 106 75.5
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 2.3e-33 145.6 107 74.8
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 3.0e-33 145.2 106 73.6
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.0e-32 142.5 106 74.5
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 2.0e-32 142.5 107 75.7
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 2.0e-32 142.5 107 75.7
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 2.0e-32 142.5 107 75.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.6e-32 142.1 106 72.6
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 3.4e-32 141.7 107 75.7
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.4e-32 141.7 107 75.7
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.4e-32 141.7 107 75.7
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 4.4e-32 141.4 111 68.5
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 7.5e-32 140.6 107 75.7
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.7e-31 139.4 110 70.0
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 1.7e-31 139.4 108 70.4
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.2e-31 139.0 107 75.7
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.2e-31 139.0 107 75.7
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.9e-31 137.9 113 69.0
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 8.3e-31 137.1 107 73.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 5.4e-30 134.4 85 83.5
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.3e-28 129.8 109 67.9
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-27 126.7 110 66.4
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.5e-27 125.6 108 67.6
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.0e-25 120.2 86 74.4
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.2e-23 112.5 104 62.5
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 2.4e-22 109.0 91 71.4
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 4.3e-19 98.2 82 74.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 7.3e-19 97.4 81 72.8
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-17 93.6 57 86.0
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 4.0e-17 91.7 104 54.8
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-15 86.3 50 80.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.4e-14 82.4 61 75.4
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.4e-14 82.4 110 42.7
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.2e-14 80.5 47 76.6
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.6e-13 79.7 53 81.1
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.0e-13 77.8 55 74.5
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 8.6e-12 73.9 64 73.4
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 9.5e-11 70.5 45 75.6
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.8e-09 66.2 41 82.9
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.1e-09 65.5 104 46.2
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.9e-09 63.9 41 80.5
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 2.6e-08 62.4 62 61.3
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 2.6e-08 62.4 98 43.9
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.5e-08 60.8 53 67.9
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 7.5e-08 60.8 105 44.8
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.5e-08 60.8 105 44.8
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.5e-08 60.8 105 44.8
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.5e-08 60.8 105 44.8
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.9e-07 58.2 41 73.2
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.4e-06 56.6 41 70.7


User provided reference genes

Program Settings