Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g018130.3 Solanum lycopersicum HOM05D003014 ORTHO05D003233 6.1e-103 377.5 188 100.0
Sopen09g010690 Solanum pennellii HOM05D003014 ORTHO05D003233 3.6e-95 351.7 187 94.1
Sopen01g009900 Solanum pennellii HOM05D003014 ORTHO05D003233 1.0e-86 323.6 187 86.1
Solyc01g014910.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 6.5e-81 304.3 187 81.3
PGSC0003DMG400045009 Solanum tuberosum HOM05D003014 ORTHO05D003233 1.4e-70 270.0 187 71.7
Sopen01g010120 Solanum pennellii HOM05D003014 ORTHO05D003233 1.2e-66 256.9 187 66.8
Sopen09g010770 Solanum pennellii HOM05D003014 ORTHO05D003233 1.1e-64 250.4 187 65.2
Solyc09g018150.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 6.8e-62 241.1 187 63.6
PGSC0003DMG400025780 Solanum tuberosum HOM05D003014 ORTHO05D003233 1.3e-57 226.9 187 62.6
PGSC0003DMG400025781 Solanum tuberosum HOM05D003014 ORTHO05D003233 4.0e-54 215.3 187 59.9
PGSC0003DMG400025783 Solanum tuberosum HOM05D003014 ORTHO05D003233 4.0e-54 215.3 187 58.8
PGSC0003DMG400025782 Solanum tuberosum HOM05D003014 ORTHO05D003233 8.3e-52 207.6 187 58.3
Solyc01g107950.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.7e-49 199.9 184 58.2
Sopen01g050130 Solanum pennellii HOM05D003014 ORTHO05D003233 3.9e-49 198.7 184 58.2
Sopen01g050140 Solanum pennellii HOM05D000002 ORTHO05D003233 1.7e-44 183.3 187 55.1
Solyc01g057300.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.2e-44 183.0 187 54.0
Sopen01g021920 Solanum pennellii HOM05D003014 ORTHO05D003233 3.2e-43 179.1 187 53.5
Solyc01g107960.4 Solanum lycopersicum HOM05D003014 ORTHO05D003233 2.7e-42 176.0 187 52.4
Sopen01g050170 Solanum pennellii HOM05D003014 ORTHO05D003233 8.6e-41 171.0 187 52.4
Solyc01g107970.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.1e-40 170.6 187 51.9
Sopen01g050150 Solanum pennellii HOM05D003014 ORTHO05D003233 6.2e-39 164.9 187 51.9
Solyc12g036430.3 Solanum lycopersicum HOM05D003014 ORTHO05D003233 7.3e-32 141.4 128 56.2
Solyc01g014960.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.2e-31 140.6 187 42.2
Sopen12g016670 Solanum pennellii HOM05D003014 ORTHO05D003233 8.1e-31 137.9 113 59.3
Sopen01g010070 Solanum pennellii HOM05D003014 ORTHO05D003233 1.1e-30 137.5 187 42.2
CAN.G1231.38 Capsicum annuum HOM05D003014 ORTHO05D003233 1.0e-25 120.9 194 41.8
CAN.G1041.46 Capsicum annuum HOM05D003014 ORTHO05D003233 5.6e-24 115.2 166 43.4
CAN.G1838.2 Capsicum annuum HOM05D003014 ORTHO05D003233 1.6e-23 113.6 166 44.0
CAN.G1041.44 Capsicum annuum HOM05D003014 ORTHO05D003233 2.8e-23 112.8 190 41.6
Solyc01g020170.2 Solanum lycopersicum HOM05D003014 ORTHO05D003233 1.1e-22 110.9 121 50.4
PGSC0003DMG400014979 Solanum tuberosum HOM05D003014 ORTHO05D003233 4.2e-19 99.0 187 36.4
CAN.G1838.1 Capsicum annuum HOM05D003014 ORTHO05D003233 9.3e-19 97.8 144 44.4
CAN.G1041.50 Capsicum annuum HOM05D003014 ORTHO05D003233 2.5e-16 89.7 131 43.5
Nitab4.5_0000292g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 3.6e-15 85.9 176 35.8
Nitab4.5_0001230g0010 Nicotiana tabacum HOM05D003014 ORTHO05D003233 1.1e-14 84.3 178 34.8
Solyc01g020180.1 Solanum lycopersicum HOM05D003014 ORTHO05D003233 5.3e-14 82.0 75 53.3
Nitab4.5_0001428g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 1.5e-13 80.5 168 35.7
TAR376G0856 Trochodendron aralioides HOM05D003014 ORTHO05D003233 1.5e-13 80.5 102 45.1
CSS0044289 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 5.8e-13 78.6 158 36.7
Prupe.8G127700 Prunus persica HOM05D003014 ORTHO05D003233 1.7e-12 77.0 167 35.9
Peaxi162Scf00152g00131 Petunia axillaris HOM05D003014 ORTHO05D003233 2.2e-12 76.6 179 34.6
Potri.001G305100 Populus trichocarpa HOM05D003014 ORTHO05D003233 2.2e-12 76.6 106 43.4
CiPaw.06G171700 Carya illinoinensis HOM05D003014 ORTHO05D003233 2.9e-12 76.3 97 41.2
TAR381G0350 Trochodendron aralioides HOM05D003014 ORTHO05D003233 3.8e-12 75.9 103 42.7
Cfa004537 Carpinus fangiana HOM05D003014 ORTHO05D003233 4.9e-12 75.5 106 43.4
Eucgr.G01493 Eucalyptus grandis HOM05D003014 ORTHO05D003233 4.9e-12 75.5 100 43.0
Nitab4.5_0007431g0020 Nicotiana tabacum HOM05D003014 ORTHO05D003233 4.9e-12 75.5 94 41.5
CSS0015958 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 6.4e-12 75.1 181 34.8
Sc08g0001710 Simmondsia chinensis HOM05D003014 ORTHO05D003233 8.4e-12 74.7 104 38.5
Gohir.A13G041500 Gossypium hirsutum HOM05D003014 ORTHO05D003233 2.4e-11 73.2 70 48.6
Gohir.D13G040200 Gossypium hirsutum HOM05D003014 ORTHO05D003233 2.4e-11 73.2 70 48.6
Gorai.013G045100 Gossypium raimondii HOM05D003014 ORTHO05D003233 2.4e-11 73.2 70 48.6
MBI17_g08637_MAGBIO Magnolia biondii HOM05D003014 ORTHO05D003233 2.4e-11 73.2 103 39.8
Nn1g04801 Nelumbo nucifera HOM05D003014 ORTHO05D003233 2.4e-11 73.2 98 41.8
Lsat_1_v5_gn_9_110961 Lactuca sativa HOM05D003014 ORTHO05D003233 3.2e-11 72.8 65 53.8
COL.COLO4_32636 Corchorus olitorius HOM05D003014 ORTHO05D003233 5.4e-11 72.0 68 50.0
GSVIVG01031718001 Vitis vinifera HOM05D003014 ORTHO05D003233 5.4e-11 72.0 82 45.1
Lj4g0009952 Lotus japonicus HOM05D003014 ORTHO05D003233 7.1e-11 71.6 128 35.9
Manes.18G039500 Manihot esculenta HOM05D003014 ORTHO05D003233 7.1e-11 71.6 113 37.2
Dinv42167 Davidia involucrata HOM05D003014 ORTHO05D003233 9.3e-11 71.2 177 33.9
PSO170G5216 Papaver somniferum HOM05D003014 ORTHO05D003233 1.2e-10 70.9 66 50.0
PSO210G4688 Papaver somniferum HOM05D003014 ORTHO05D003233 1.2e-10 70.9 66 50.0
Rhsim11G0164600 Rhododendron simsii HOM05D003014 ORTHO05D003233 1.2e-10 70.9 66 51.5
CSS0023387 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 1.6e-10 70.5 181 33.1
Dinv15730 Davidia involucrata HOM05D003014 ORTHO05D003233 1.6e-10 70.5 97 43.3
Manes.10G080300 Manihot esculenta HOM05D003014 ORTHO05D003233 1.6e-10 70.5 193 30.6
Peaxi162Scf00016g02026 Petunia axillaris HOM05D003014 ORTHO05D003233 1.6e-10 70.5 67 49.3
vmacro02036 Vaccinium macrocarpon HOM05D003014 ORTHO05D003233 1.6e-10 70.5 85 42.4
EL10Ac9g21584 Beta vulgaris HOM05D003014 ORTHO05D003233 2.1e-10 70.1 66 48.5
CANSAT25G0518 Cannabis sativa HOM05D003014 ORTHO05D003233 2.1e-10 70.1 70 50.0
Lj9C355T10 Lonicera japonica HOM05D003014 ORTHO05D003233 2.1e-10 70.1 86 41.9
Lj9C357T7 Lonicera japonica HOM05D003014 ORTHO05D003233 2.1e-10 70.1 86 41.9
Sabra16G0191500 Salix brachista HOM05D000187 ORTHO05D000230 2.1e-10 70.1 105 40.0
Hma1.2p1_0370F.1_g137650 Hydrangea macrophylla HOM05D003014 ORTHO05D003233 2.7e-10 69.7 102 42.2
Actinidia12937 Actinidia chinensis HOM05D003014 ORTHO05D003233 3.5e-10 69.3 73 46.6
Cpa.g.sc21.177 Carica papaya HOM05D003014 ORTHO05D003233 3.5e-10 69.3 141 31.9
Duzib132G1208 Durio zibethinus HOM05D003014 ORTHO05D003233 3.5e-10 69.3 69 47.8
Sed0005157 Sechium edule HOM05D003014 ORTHO05D003233 3.5e-10 69.3 108 37.0
MELO3C018451.2 Cucumis melo HOM05D003014 ORTHO05D003233 4.6e-10 68.9 79 41.8
Haze_10098 Corylus avellana HOM05D003014 ORTHO05D003233 6.0e-10 68.6 81 46.9
Gohir.D01G110400 Gossypium hirsutum HOM05D003014 ORTHO05D003233 6.0e-10 68.6 81 42.0
Gorai.002G135000 Gossypium raimondii HOM05D003014 ORTHO05D003233 6.0e-10 68.6 81 42.0
Oeu013724.1 Olea europaea HOM05D003014 ORTHO05D003233 6.0e-10 68.6 71 46.5
Phvul.003G048000 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 6.0e-10 68.6 90 40.0
Sed0010940 Sechium edule HOM05D003014 ORTHO05D003233 6.0e-10 68.6 132 31.1
TWI36G1467 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 6.0e-10 68.6 125 36.8
Sabra14G0017800 Salix brachista HOM05D003014 ORTHO05D003233 7.9e-10 68.2 69 44.9
Cc02_g18940 Coffea canephora HOM05D003014 ORTHO05D003233 1.3e-09 67.4 100 39.0
Gohir.A01G122633 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.3e-09 67.4 100 41.0
THA.LOC104806046 Tarenaya hassleriana HOM05D003014 ORTHO05D003233 1.3e-09 67.4 64 48.4
Gohir.A01G122666 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.8e-09 67.0 100 41.0
Thecc.02G102900 Theobroma cacao HOM05D003014 ORTHO05D003233 1.8e-09 67.0 63 49.2
Lj4g0025998 Lotus japonicus HOM05D003014 ORTHO05D003233 2.3e-09 66.6 110 37.3
GSVIVG01009469001 Vitis vinifera HOM05D003014 ORTHO05D003233 2.3e-09 66.6 66 48.5
Ciclev10030106m.g Citrus clementina HOM05D003014 ORTHO05D003233 3.0e-09 66.2 148 33.1
COL.COLO4_26545 Corchorus olitorius HOM05D003014 ORTHO05D003233 3.0e-09 66.2 118 36.4
CsaV3_7G008580 Cucumis sativus L. HOM05D003014 ORTHO05D003233 3.0e-09 66.2 65 46.2
ECA240G1347 Erigeron canadensis HOM05D003014 ORTHO05D003233 3.0e-09 66.2 100 41.0
Medtr4g085700 Medicago truncatula HOM05D003014 ORTHO05D003233 3.9e-09 65.9 145 30.3
ClCG02G005950 Citrullus lanatus HOM05D003014 ORTHO05D003233 5.1e-09 65.5 102 37.3
Ciclev10003973m.g Citrus clementina HOM05D003014 ORTHO05D003233 5.1e-09 65.5 109 35.8
Potri.014G025900 Populus trichocarpa HOM05D003014 ORTHO05D003233 5.1e-09 65.5 95 40.0
QL11p034987 Quercus lobata HOM05D003014 ORTHO05D003233 5.1e-09 65.5 101 38.6
Medtr4g085660 Medicago truncatula HOM05D003014 ORTHO05D003233 6.7e-09 65.1 95 38.9
PGR042G3868 Punica granatum HOM05D003014 ORTHO05D003233 6.7e-09 65.1 102 42.2
TWI56G0629 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 6.7e-09 65.1 87 42.5
VMungo0251G3056 Vigna mungo HOM05D003014 ORTHO05D003233 6.7e-09 65.1 63 46.0
ATR0584G279 Amborella trichopoda HOM05D003014 ORTHO05D003233 8.7e-09 64.7 63 46.0
Lalb_Chr20g0108401 Lupinus albus HOM05D003014 ORTHO05D003233 8.7e-09 64.7 92 37.0
Thecc.08G003900 Theobroma cacao HOM05D003014 ORTHO05D003233 8.7e-09 64.7 94 41.5
FvH4_2g05810 Fragaria vesca HOM05D003014 ORTHO05D003233 1.1e-08 64.3 138 34.8
FAN24G2463 Fragaria x ananassa HOM05D003014 ORTHO05D003233 1.1e-08 64.3 137 35.0
Oeu001777.1 Olea europaea HOM05D003014 ORTHO05D003233 1.1e-08 64.3 64 45.3
Sabra09G0076200 Salix brachista HOM05D003014 ORTHO05D003233 1.1e-08 64.3 66 48.5
HPP92_002772 Vanilla planifolia HOM05D003014 ORTHO05D003233 1.1e-08 64.3 64 45.3
CARHR039820 Cardamine hirsuta HOM05D003014 ORTHO05D003233 1.5e-08 63.9 68 47.1
Migut.N01183 Erythranthe guttata HOM05D003014 ORTHO05D003233 1.5e-08 63.9 66 45.5
Glyma.02G103200 Glycine max HOM05D003014 ORTHO05D003233 1.5e-08 63.9 118 35.6
QL02p004396 Quercus lobata HOM05D003014 ORTHO05D003233 1.9e-08 63.5 80 40.0
unitig_0.g90 Utricularia gibba HOM05D003014 ORTHO05D003233 2.5e-08 63.2 92 38.0
Zm00001eb082900 Zea mays HOM05D003014 ORTHO05D003233 2.5e-08 63.2 101 37.6
CDE02G2363 Ceratophyllum demersum HOM05D003014 ORTHO05D003233 3.3e-08 62.8 70 42.9
SMO270G0033 Selaginella moellendorffii HOM05D003014 ORTHO05D003233 3.3e-08 62.8 66 40.9
BcaB02g11106 Brassica carinata HOM05D003014 ORTHO05D003233 4.3e-08 62.4 68 47.1
BcaC05g27473 Brassica carinata HOM05D003014 ORTHO05D003233 4.3e-08 62.4 68 47.1
A05p20490 Brassica napus HOM05D003014 ORTHO05D003233 4.3e-08 62.4 68 47.1
C05p34380 Brassica napus HOM05D003014 ORTHO05D003233 4.3e-08 62.4 68 47.1
BolC5t32166H Brassica oleracea HOM05D003014 ORTHO05D003233 4.3e-08 62.4 68 47.1
BraA05t20958Z Brassica rapa HOM05D003014 ORTHO05D003233 4.3e-08 62.4 68 47.1
FAN15G1137 Fragaria x ananassa HOM05D003014 ORTHO05D003233 4.3e-08 62.4 115 33.0
Mapoly0126s0029 Marchantia polymorpha HOM05D003014 ORTHO05D003233 4.3e-08 62.4 63 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3495 Anthoceros agrestis HOM05D003014 ORTHO05D003233 5.6e-08 62.0 59 49.2
AUR62010242 Chenopodium quinoa HOM05D003014 ORTHO05D003233 5.6e-08 62.0 59 47.5
Gohir.D02G209050 Gossypium hirsutum HOM05D003014 ORTHO05D003233 5.6e-08 62.0 59 47.5
Medtr4g081980 Medicago truncatula HOM05D003014 ORTHO05D003233 7.4e-08 61.6 153 30.1
Psat0s672g0040 Pisum sativum HOM05D003014 ORTHO05D003233 7.4e-08 61.6 92 40.2
Psat7g178280 Pisum sativum HOM05D003014 ORTHO05D003233 9.6e-08 61.2 90 38.9
Prupe.1G432900 Prunus persica HOM05D003014 ORTHO05D003233 9.6e-08 61.2 94 31.9
Oeu007296.1 Olea europaea HOM05D003014 ORTHO05D003233 1.3e-07 60.8 66 40.9
Atru.chr13.721 Acer truncatum HOM05D003014 ORTHO05D003233 1.6e-07 60.5 103 37.9
arahy.Tifrunner.gnm1.ann1.U584NJ Arachis hypogaea HOM05D003014 ORTHO05D003233 1.6e-07 60.5 70 38.6
RcHm_v2.0_Chr6g0257881 Rosa chinensis HOM05D003014 ORTHO05D003233 1.6e-07 60.5 111 35.1
MD15G1079900 Malus domestica HOM05D003014 ORTHO05D003233 2.1e-07 60.1 86 34.9
Oeu001780.1 Olea europaea HOM05D003014 ORTHO05D003233 3.7e-07 59.3 64 48.4
FAN20G1742 Fragaria x ananassa HOM05D003014 ORTHO05D003233 4.8e-07 58.9 94 34.0
TPR.G12728 Trifolium pratense HOM05D003014 ORTHO05D003233 6.2e-07 58.5 112 34.8
Psat0s1067g0080 Pisum sativum HOM05D003014 ORTHO05D003233 8.1e-07 58.2 96 41.7
Psat0s1067g0120 Pisum sativum HOM05D003014 ORTHO05D003233 8.1e-07 58.2 96 41.7
Psat0s1066g0040 Pisum sativum HOM05D003014 ORTHO05D003233 1.1e-06 57.8 92 38.0
VMungo0251G1556 Vigna mungo HOM05D003014 ORTHO05D003233 1.4e-06 57.4 65 44.6
SalBow6G6778 Salvia bowleyana HOM05D003014 ORTHO05D003233 1.8e-06 57.0 64 43.8
HanXRQChr03g0074841 Helianthus annuus HOM05D003014 ORTHO05D003233 2.4e-06 56.6 108 31.5
A06p03770 Brassica napus HOM05D003014 ORTHO05D003233 3.1e-06 56.2 100 37.0
BraA06t23582Z Brassica rapa HOM05D003014 ORTHO05D003233 3.1e-06 56.2 100 37.0
Os04g0429400 Oryza sativa ssp. japonica HOM05D003014 ORTHO05D003233 3.1e-06 56.2 89 36.0
Psat7g225560 Pisum sativum HOM05D003014 ORTHO05D003233 4.0e-06 55.8 107 35.5
BcaC08g43150 Brassica carinata HOM05D003014 ORTHO05D003233 5.3e-06 55.5 100 37.0
C06p04340 Brassica napus HOM05D003014 ORTHO05D003233 5.3e-06 55.5 100 37.0
BolC6t35563H Brassica oleracea HOM05D003014 ORTHO05D003233 5.3e-06 55.5 100 37.0
Phvul.003G048100 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 6.9e-06 55.1 64 40.6
Psat7g126040 Pisum sativum HOM05D003014 ORTHO05D003233 6.9e-06 55.1 90 32.2
SalBow6G1753 Salvia bowleyana HOM05D003014 ORTHO05D003233 9.0e-06 54.7 83 37.3
SEGI_28244 Sequoiadendron giganteum HOM05D003014 ORTHO05D003233 9.0e-06 54.7 84 35.7


User provided reference genes

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