Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.3e-26 120.6 61 100.0
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.8e-24 115.2 58 100.0
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 1.8e-24 115.2 58 100.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 5.3e-24 113.6 58 98.3
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 9.0e-24 112.8 60 93.3
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 9.0e-24 112.8 60 93.3
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 2.0e-23 111.7 58 96.6
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.0e-22 109.4 58 94.8
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.5e-22 106.3 58 91.4
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 2.5e-21 104.8 58 89.7
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 2.5e-21 104.8 58 87.9
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 3.2e-21 104.4 58 89.7
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 4.2e-21 104.0 58 89.7
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 4.2e-21 104.0 58 89.7
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 4.2e-21 104.0 58 89.7
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 5.5e-21 103.6 58 89.7
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 5.5e-21 103.6 58 87.9
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 5.5e-21 103.6 58 87.9
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 7.2e-21 103.2 58 86.2
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 7.2e-21 103.2 58 87.9
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 9.3e-21 102.8 58 87.9
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 1.2e-20 102.4 58 87.9
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 1.2e-20 102.4 58 86.2
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.6e-20 102.1 58 87.9
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 1.6e-20 102.1 58 87.9
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 1.6e-20 102.1 58 87.9
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 2.1e-20 101.7 58 87.9
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 2.1e-20 101.7 58 86.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.7e-20 101.3 58 82.8
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 2.7e-20 101.3 55 90.9
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 2.7e-20 101.3 58 86.2
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 2.7e-20 101.3 58 86.2
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.7e-20 101.3 55 89.1
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.7e-20 101.3 55 89.1
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 3.6e-20 100.9 58 87.9
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 3.6e-20 100.9 58 86.2
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 84.5
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 4.6e-20 100.5 55 85.5
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 84.5
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 86.2
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 86.2
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 86.2
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 82.8
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 82.8
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 84.5
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 84.5
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 4.6e-20 100.5 58 86.2
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 6.1e-20 100.1 58 86.2
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 6.1e-20 100.1 58 86.2
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 6.1e-20 100.1 58 82.8
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 7.9e-20 99.8 58 82.8
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 1.0e-19 99.4 58 84.5
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 1.0e-19 99.4 58 84.5
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 1.3e-19 99.0 58 82.8
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 1.3e-19 99.0 58 81.0
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 1.3e-19 99.0 58 82.8
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 1.8e-19 98.6 58 84.5
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 1.8e-19 98.6 58 84.5
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 1.8e-19 98.6 55 89.1
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 2.3e-19 98.2 58 84.5
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 2.3e-19 98.2 58 84.5
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 2.3e-19 98.2 58 81.0
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 2.3e-19 98.2 58 82.8
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 2.3e-19 98.2 58 82.8
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 2.3e-19 98.2 55 85.5
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 3.0e-19 97.8 58 81.0
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.0e-19 97.8 58 81.0
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.0e-19 97.8 58 81.0
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 3.9e-19 97.4 58 82.8
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.9e-19 97.4 58 79.3
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.9e-19 97.4 58 79.3
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 3.9e-19 97.4 58 79.3
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 3.9e-19 97.4 58 79.3
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 5.1e-19 97.1 55 85.5
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 5.1e-19 97.1 55 85.5
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 5.1e-19 97.1 58 82.8
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 6.7e-19 96.7 55 87.3
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 8.7e-19 96.3 58 77.6
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 1.1e-18 95.9 58 82.8
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 1.1e-18 95.9 58 82.8
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 1.1e-18 95.9 58 79.3
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 1.5e-18 95.5 55 83.6
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 1.5e-18 95.5 58 82.8
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 1.5e-18 95.5 58 82.8
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-18 95.5 58 82.8
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-18 95.5 58 82.8
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 1.5e-18 95.5 58 82.8
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.5e-18 95.5 58 75.9
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 1.5e-18 95.5 57 84.2
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.9e-18 95.1 58 81.0
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.9e-18 95.1 58 81.0
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 2.5e-18 94.7 58 81.0
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 2.5e-18 94.7 58 81.0
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 3.3e-18 94.4 58 79.3
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 3.3e-18 94.4 58 81.0
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 7.4e-18 93.2 58 77.6
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 7.4e-18 93.2 58 77.6
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 9.7e-18 92.8 58 79.3
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 9.7e-18 92.8 58 79.3
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 9.7e-18 92.8 58 79.3
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 1.6e-17 92.0 58 77.6
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 2.2e-17 91.7 58 74.1
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 8.2e-17 89.7 55 80.0
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 1.1e-16 89.4 58 74.1
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 5.3e-16 87.0 58 72.4
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.5e-15 85.5 66 69.7
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 1.5e-15 85.5 66 69.7
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.4e-08 61.6 33 84.8


User provided reference genes

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