Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1640.9 885 100.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1601.6 885 97.9
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1518.4 891 88.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1513.8 891 87.5
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1496.5 900 87.1
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1492.6 1011 83.2
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1456.0 840 88.3
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1401.3 891 80.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1374.0 894 78.9
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1360.5 894 79.2
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1312.4 896 76.1
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1293.5 850 78.6
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 903 73.6
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1261.5 903 72.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1245.0 902 72.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1240.7 906 71.4
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1238.0 906 71.4
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1236.5 898 72.9
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1232.6 905 71.9
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1221.1 897 73.4
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1213.7 900 70.2
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1211.4 895 70.3
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 902 70.8
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 916 71.9
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1197.6 893 70.5
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 891 70.7
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 897 70.1
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 895 70.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 897 69.8
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 880 72.4
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 899 70.0
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 895 70.5
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 889 70.4
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 862 71.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 893 70.1
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 895 69.8
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 893 69.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1187.2 894 70.5
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 901 69.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 891 70.9
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 896 69.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 896 69.6
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1179.9 892 69.1
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 893 69.3
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 907 69.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 901 71.4
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 885 70.5
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 893 69.9
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 892 71.0
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 898 68.7
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 907 68.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1169.1 892 68.0
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1169.1 894 68.3
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 892 71.7
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 900 68.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 939 70.1
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 895 68.5
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1160.6 933 67.5
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1159.1 890 67.8
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 892 70.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1156.4 890 68.8
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 915 66.6
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 902 66.7
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 898 68.3
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1152.5 870 68.7
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1152.5 913 66.6
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 905 67.4
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 904 66.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 872 71.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 898 68.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 890 68.0
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 892 67.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1144.4 901 67.4
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1144.0 887 67.4
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1142.5 917 66.1
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 911 69.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 887 70.7
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1139.8 875 71.1
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 899 66.9
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 899 66.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 892 70.9
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1132.9 918 69.3
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1131.7 915 68.4
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1130.5 900 67.8
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 897 70.9
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 921 65.6
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1124.4 892 70.2
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1122.8 740 77.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 937 68.6
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 992 62.7
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1120.1 907 69.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1119.4 920 69.3
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1119.0 907 69.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1117.8 907 69.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1117.1 946 62.7
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 842 70.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1112.1 891 65.4
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1111.3 875 66.7
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1107.8 886 66.4
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1104.4 894 65.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1089.7 896 68.6
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1085.5 884 64.4
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1084.3 862 71.6
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1083.2 898 66.7
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1083.2 898 66.7
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1080.5 854 66.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 7.6e-305 1050.4 876 64.2
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 9.9e-305 1050.0 890 63.1
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.1e-303 1043.9 830 65.5
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 4.3e-300 1034.6 893 63.3
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 7.8e-294 1013.8 787 67.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.0e-293 1011.9 893 59.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 3.1e-290 1001.9 593 83.0
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.2e-280 969.1 725 71.7
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 7.4e-276 954.1 892 59.6
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 4.5e-273 944.9 733 66.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.4e-258 896.7 729 70.5
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.5e-257 893.3 905 54.1
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 7.7e-257 891.0 962 54.3
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.9e-256 889.0 889 52.5
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 6.5e-256 887.9 899 57.5
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.7e-251 872.1 504 82.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 3.0e-237 825.9 870 53.4
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.1e-231 807.4 699 61.9
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.5e-180 637.5 659 55.1
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.3e-175 618.6 384 76.6
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.8e-174 616.7 369 78.6
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.6e-166 590.9 341 80.4
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.6e-164 583.6 352 79.8
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-162 577.4 361 75.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 6.0e-161 572.4 567 58.7
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.8e-155 553.1 465 63.9
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.6e-148 530.4 541 58.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 6.1e-137 492.7 710 43.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.2e-131 474.2 871 36.9
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 9.4e-130 468.8 990 36.3
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 5.0e-123 446.4 305 70.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 5.4e-109 399.8 297 68.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.3e-106 389.4 525 48.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.2e-103 382.1 442 56.3
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 2.8e-97 360.9 1019 29.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 5.4e-85 320.1 579 38.7
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.2e-70 271.6 382 52.6
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.1e-68 265.0 165 75.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 7.9e-52 209.9 327 41.3
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.5e-45 188.3 147 76.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.8e-40 172.2 104 77.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.0e-35 156.4 107 67.3
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.3e-35 155.2 115 72.2
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.3e-33 149.4 106 68.9
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.7e-20 104.4 78 65.4
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 7.4e-18 97.1 77 67.5
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.8e-14 84.7 61 68.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.5e-14 84.0 86 51.2
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.6e-12 79.3 86 50.0
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 2.1e-12 79.0 72 69.4
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.3e-11 75.5 69 49.3
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.7e-09 69.3 52 71.2
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 7.0e-08 63.9 57 57.9
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.6e-07 62.8 52 61.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 3.5e-07 61.6 53 62.3
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.5e-07 61.2 45 66.7


User provided reference genes

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