Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.8e-199 698.0 352 100.0
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.3e-194 682.9 351 98.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.5e-187 658.7 351 95.2
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.3e-185 651.0 351 92.9
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.0e-179 632.5 351 91.5
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.5e-174 614.4 352 88.9
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.4e-169 599.7 350 86.6
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 5.9e-168 594.3 350 86.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 3.2e-166 588.6 351 84.6
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 5.5e-166 587.8 300 99.3
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 3.0e-164 582.0 327 88.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.2e-163 580.1 341 85.3
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.3e-162 576.6 325 87.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.2e-162 575.9 336 85.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 4.8e-162 574.7 326 86.2
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 6.3e-162 574.3 325 87.1
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 6.3e-162 574.3 340 83.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.1e-161 573.5 351 82.6
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.8e-161 572.8 326 85.9
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.8e-161 572.8 326 86.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.8e-161 572.8 341 84.5
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 2.4e-161 572.4 325 86.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.4e-161 572.4 325 86.8
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.4e-161 572.4 325 86.8
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.4e-161 572.4 323 87.6
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 4.1e-161 571.6 326 85.9
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.4e-161 571.2 325 86.5
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 7.0e-161 570.9 351 81.8
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.2e-160 570.1 323 87.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.6e-160 569.7 346 82.9
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.6e-160 569.7 325 86.5
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.6e-160 569.7 348 81.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.5e-160 568.5 325 86.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 3.5e-160 568.5 326 85.9
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 4.5e-160 568.2 326 85.9
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.9e-160 567.8 326 85.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 5.9e-160 567.8 323 86.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.0e-159 567.0 326 85.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.0e-159 567.0 326 84.7
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.0e-159 567.0 326 86.2
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.3e-159 566.6 331 83.7
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.3e-159 566.6 326 86.2
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.2e-159 565.8 325 85.8
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.9e-159 565.5 346 82.1
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.9e-159 565.5 346 82.1
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.9e-159 565.5 324 85.8
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.9e-159 565.5 322 85.1
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.8e-159 565.1 338 82.8
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 6.5e-159 564.3 326 85.3
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 6.5e-159 564.3 346 82.1
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 6.5e-159 564.3 353 80.5
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.1e-158 563.5 328 83.8
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.5e-158 563.1 346 82.7
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.9e-158 562.8 350 80.3
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.5e-158 562.4 350 80.9
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 4.2e-158 561.6 330 83.3
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-157 560.1 326 84.4
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.7e-157 558.9 328 83.2
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.7e-157 558.9 351 79.8
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 4.7e-157 558.1 345 80.0
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 4.7e-157 558.1 346 80.1
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.0e-156 557.0 328 83.5
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-156 556.6 328 82.9
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.8e-156 556.2 381 75.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.0e-156 555.4 325 83.7
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.0e-156 555.4 325 83.7
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 4.0e-156 555.1 346 79.5
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 8.8e-156 553.9 348 79.3
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 8.8e-156 553.9 370 76.2
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 2.6e-155 552.4 325 84.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.6e-155 552.4 326 83.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-155 552.4 326 83.7
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-155 552.0 326 83.7
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 4.4e-155 551.6 324 84.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.5e-155 550.8 330 82.7
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-154 549.7 326 83.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-154 549.7 326 83.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.8e-154 548.9 325 83.7
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.7e-154 548.5 351 78.9
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.9e-154 548.1 322 82.6
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.4e-153 546.6 326 82.8
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 5.4e-153 544.7 323 82.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 9.1e-153 543.9 326 82.5
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 9.1e-153 543.9 328 81.7
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-152 543.5 328 81.4
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.7e-152 542.3 350 78.0
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 7.7e-152 540.8 325 82.2
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-151 540.4 343 79.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.7e-151 539.7 351 78.3
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.3e-151 539.3 341 79.2
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 6.6e-151 537.7 353 78.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.6e-151 537.7 328 81.4
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.5e-150 536.6 380 72.6
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 4.2e-150 535.0 344 78.8
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 5.6e-150 534.6 326 80.4
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 3.0e-148 528.9 323 79.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 4.0e-148 528.5 325 79.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 8.9e-148 527.3 327 78.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 2.0e-147 526.2 342 76.6
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.7e-147 524.6 345 78.0
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 9.8e-147 523.9 382 71.7
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.2e-145 518.8 301 84.7
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 7.0e-145 517.7 325 76.6
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.5e-144 515.4 407 67.3
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.1e-140 502.3 398 67.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.1e-140 502.3 325 73.2
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 7.5e-139 497.7 326 77.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.9e-138 495.7 334 74.3
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.9e-137 493.0 325 75.7
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.7e-135 486.5 326 74.5
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 1.5e-134 483.4 285 83.5
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 8.1e-133 477.6 353 68.3
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.9e-129 466.5 324 68.8
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 9.2e-129 464.2 322 69.9
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.1e-128 463.0 335 72.8
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.5e-128 462.2 257 89.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 7.3e-126 454.5 324 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.1e-124 449.1 324 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 8.9e-124 447.6 324 67.0
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.5e-123 446.8 302 72.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.7e-122 442.2 304 72.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.4e-121 440.3 283 80.2
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.2e-120 437.2 335 63.9
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.0e-120 434.9 257 84.0
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 5.6e-118 428.3 325 63.1
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-118 428.3 360 62.5
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-113 413.3 325 67.7
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.4e-113 412.9 307 63.8
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.2e-112 410.6 245 83.3
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.3e-111 407.1 325 65.5
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 4.3e-110 402.1 241 83.0
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.4e-108 396.4 300 65.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.2e-107 394.0 240 82.1
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.4e-107 392.1 238 81.1
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.8e-106 389.0 273 68.5
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-103 380.2 363 56.2
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.6e-101 372.5 295 65.1
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.1e-100 370.9 238 75.6
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.0e-99 366.7 350 58.0
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-98 362.8 240 76.2
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.4e-97 359.8 320 56.9
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.5e-97 358.6 233 74.7
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 6.0e-88 328.6 196 84.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.0e-76 288.1 286 58.0
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-74 284.3 203 74.4
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 6.5e-66 255.4 129 96.9
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.0e-63 246.5 271 49.1
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.1e-60 236.1 161 68.3
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 6.5e-58 228.8 143 74.1
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 3.0e-55 219.9 253 53.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.6e-54 216.9 126 83.3
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.4e-52 210.3 361 41.8
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 5.2e-47 192.6 113 81.4
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.2e-45 187.2 233 40.3
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 9.5e-41 171.8 88 93.2
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.1e-40 169.1 208 45.2
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.8e-39 167.5 104 77.9
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-37 160.6 92 82.6
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.2e-37 160.6 97 74.2
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 4.5e-35 152.9 96 74.0
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.8e-34 149.8 96 81.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.6e-32 143.3 110 70.9
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 4.4e-30 136.3 76 85.5
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 6.4e-29 132.5 82 73.2
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.1e-28 129.8 189 48.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.7e-21 106.7 73 68.5
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.2e-20 103.6 63 85.7
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.4e-20 102.8 73 60.3
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 7.0e-20 102.4 58 77.6
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.5e-19 100.1 72 63.9
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 5.0e-18 96.3 62 79.0
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.5e-17 94.0 73 60.3
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.1e-15 88.6 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-07 62.0 50 62.0
CSS0002735 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D002061 5.8e-06 56.2 41 75.6


User provided reference genes

Program Settings